You are here

Home

KJC3_012768-T1, KJC3_012768-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012768-T1
Unique NameKJC3_012768-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4532400..4533978-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012768-T1 ID=KJC3_012768-T1|Name=KJC3_012768-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1579bp|location=Sequence derived from alignment at ch8:4532400..4533978- (Aspergillus niger KJC3)
CTAGGGGTAACTGTGTAACAAATAGCTGGGTGAATACACAGACTTCAGTA
AACTGTGACTATCACTACATCTAGTTTCCTCTTACTAGCTATAAGAACCA
GGCACTTCCGGACTCTCGGCCTTCATGCCCTCTCTCTACACCCGTTCCTT
CACTGCAGTACTTATCACTTCGAGGTGTCAGAGACAGTCAGAATATTACA
CAGTTTGTTGACCTGACAGCCTAGAACGACTTACCGACCTCTGTTTTGTC
TCAAAGGGCCAAAAGACAGTCAAGGAAGTAACAATGGCAACAGATTCACT
TCCCACAAGCCTGTCCCATGCGTTAGGCTCTACGCTCTTGAGCACGCGTC
AATGTGTCGTGCAACTTCCCTCAGATATCGCGGTCGGCTCTGGTATGTAT
TGAAATGCATGGGCTCTAGTTGTGGGCGAAGACTAACTATGTTATAGTTA
TTATTGGTGGATTTACAGCCTGCATTATGACCAAATATGCTCTCCATCAT
GCCTCCCAACACCCCGAACTGCAGAACCAGGTTGACCTTCGCTACTCTGA
AGTTCACTTCCACCGTCCGATATTTGCCTCAACGTCAATTACCCTGACCT
TGCGAGAGGTGCATATCTCCAAAGAAGGGTCTACCCTTTATGTCGAATCA
CTCCAGAATGGCAAACTCACCACTTCTGCTCATATCAGGTATGTGGACTG
TATTTACATCACGAGAAACAAATGCTTATACCCATGATGATCAGAATCAC
CAAACCATCAGTCGCAGGTATCACGCTTCCAGTAGATTGGCGTCTATCCC
CTAAGCCCTGCCCAGTCGACCTTACGAAACTCGAGACAGACAATGACCCC
AACTGGATCTCCTACCACTGCGCCTTCTACCCCACAGGATTCCGAAGAGG
TCAGTCTTACGCCAAGAACTTCATCCCGAGGGCACTGCCCACCGAGTTCG
CATACATTGAGCAATGGGTTGAACCTGGCTGGGACTATCTTCCACTAGGC
TCTCGGCCCTCTGGAACCGGCCAAGGCAAGGCAAGGTGGACCAATGACAT
GATACAATTCGTGGGAGACATGGCCCTTCCTATTCAGGAGAACTATATGC
CACATGAAGAGGGGGAGCCGTTGCCGCTGGGGAGCATAGCGGCCACGCTC
GAATTTGCGAAGCGCCAGGAGAAGGCCCGCAATGAATCACGGAGCGATTG
GAGAGTTCTCGATGATGACGGCAGCAACGAATTTCGGGGCAAAGTGCTGA
ATGTCTCCTTGACTCTCTCTACGGACATCAAGCAAAAGCTTCCCCCTGAG
GGTGTCCGATGGCTCTATCTGCGGACTGAATGCAAGAAAATTATGAATGG
CCAGATGGATATGCAGGTTCTCATTTTTAATGAAAGGATGGATCTCATTG
CTATCAGTCGTCAAGTGGCGGTTCTTGTTCCCGCGAAGTCGAAGATTCAG
AAGTTGTGAACAAGTTGTGAAACTTTGGGAATATTATTCCTTTGAATATG
CATTGAATTTAAGATGAATACAGTGAATTGTATTTGTTCTCCACCGAATC
CAGGGAGATGTCTTTGCATTGCAGCGCTT
back to top

Coding sequence (CDS) from alignment at ch8:4532400..4533978-

>KJC3_012768-T1 ID=KJC3_012768-T1|Name=KJC3_012768-T1|organism=Aspergillus niger KJC3|type=CDS|length=3195bp|location=Sequence derived from alignment at ch8:4532400..4533978- (Aspergillus niger KJC3)
AATCACCAAACCATCAGTCGCAGGTATCACGCTTCCAGTAGATTGGCGTC
TATCCCCTAAGCCCTGCCCAGTCGACCTTACGAAACTCGAGACAGACAAT
GACCCCAACTGGATCTCCTACCACTGCGCCTTCTACCCCACAGGATTCCG
AAGAGGTCAGTCTTACGCCAAGAACTTCATCCCGAGGGCACTGCCCACCG
AGTTCGCATACATTGAGCAATGGGTTGAACCTGGCTGGGACTATCTTCCA
CTAGGCTCTCGGCCCTCTGGAACCGGCCAAGGCAAGGCAAGGTGGACCAA
TGACATGATACAATTCGTGGGAGACATGGCCCTTCCTATTCAGGAGAACT
ATATGCCACATGAAGAGGGGGAGCCGTTGCCGCTGGGGAGCATAGCGGCC
ACGCTCGAATTTGCGAAGCGCCAGGAGAAGGCCCGCAATGAATCACGGAG
CGATTGGAGAGTTCTCGATGATGACGGCAGCAACGAATTTCGGGGCAAAG
TGCTGAATGTCTCCTTGACTCTCTCTACGGACATCAAGCAAAAGCTTCCC
CCTGAGGGTGTCCGATGGCTCTATCTGCGGACTGAATGCAAGAAAATTAT
GAATGGCCAGATGGATATGCAGGTTCTCATTTTTAATGAAAGGATGGATC
TCATTGCTATCAGTCGTCAAGTGGCGGTTCTTGTTCCCGCGAAGTCGAAG
ATTCAGAAGTTGTGATTATTATTGGTGGATTTACAGCCTGCATTATGACC
AAATATGCTCTCCATCATGCCTCCCAACACCCCGAACTGCAGAACCAGGT
TGACCTTCGCTACTCTGAAGTTCACTTCCACCGTCCGATATTTGCCTCAA
CGTCAATTACCCTGACCTTGCGAGAGGTGCATATCTCCAAAGAAGGGTCT
ACCCTTTATGTCGAATCACTCCAGAATGGCAAACTCACCACTTCTGCTCA
TATCAGATGGCAACAGATTCACTTCCCACAAGCCTGTCCCATGCGTTAGG
CTCTACGCTCTTGAGCACGCGTCAATGTGTCGTGCAACTTCCCTCAGATA
TCGCGGTCGGCTCTGAATCACCAAACCATCAGTCGCAGGTATCACGCTTC
CAGTAGATTGGCGTCTATCCCCTAAGCCCTGCCCAGTCGACCTTACGAAA
CTCGAGACAGACAATGACCCCAACTGGATCTCCTACCACTGCGCCTTCTA
CCCCACAGGATTCCGAAGAGGTCAGTCTTACGCCAAGAACTTCATCCCGA
GGGCACTGCCCACCGAGTTCGCATACATTGAGCAATGGGTTGAACCTGGC
TGGGACTATCTTCCACTAGGCTCTCGGCCCTCTGGAACCGGCCAAGGCAA
GGCAAGGTGGACCAATGACATGATACAATTCGTGGGAGACATGGCCCTTC
CTATTCAGGAGAACTATATGCCACATGAAGAGGGGGAGCCGTTGCCGCTG
GGGAGCATAGCGGCCACGCTCGAATTTGCGAAGCGCCAGGAGAAGGCCCG
CAATGAATCACGGAGCGATTGGAGAGTTCTCGATGATGACGGCAGCAACG
AATTTCGGGGCAAAGTGCTGAATGTCTCCTTGACTCTCTCTACGGACATC
AAGCAAAAGCTTCCCCCTGAGGGTGTCCGATGGCTCTATCTGCGGACTGA
ATGCAAGAAAATTATGAATGGCCAGATGGATATGCAGGTTCTCATTTTTA
ATGAAAGGATGGATCTCATTGCTATCAGTCGTCAAGTGGCGGTTCTTGTT
CCCGCGAAGTCGAAGATTCAGAAGTTGTGATTATTATTGGTGGATTTACA
GCCTGCATTATGACCAAATATGCTCTCCATCATGCCTCCCAACACCCCGA
ACTGCAGAACCAGGTTGACCTTCGCTACTCTGAAGTTCACTTCCACCGTC
CGATATTTGCCTCAACGTCAATTACCCTGACCTTGCGAGAGGTGCATATC
TCCAAAGAAGGGTCTACCCTTTATGTCGAATCACTCCAGAATGGCAAACT
CACCACTTCTGCTCATATCAGATGGCAACAGATTCACTTCCCACAAGCCT
GTCCCATGCGTTAGGCTCTACGCTCTTGAGCACGCGTCAATGTGTCGTGC
AACTTCCCTCAGATATCGCGGTCGGCTCTGAATCACCAAACCATCAGTCG
CAGGTATCACGCTTCCAGTAGATTGGCGTCTATCCCCTAAGCCCTGCCCA
GTCGACCTTACGAAACTCGAGACAGACAATGACCCCAACTGGATCTCCTA
CCACTGCGCCTTCTACCCCACAGGATTCCGAAGAGGTCAGTCTTACGCCA
AGAACTTCATCCCGAGGGCACTGCCCACCGAGTTCGCATACATTGAGCAA
TGGGTTGAACCTGGCTGGGACTATCTTCCACTAGGCTCTCGGCCCTCTGG
AACCGGCCAAGGCAAGGCAAGGTGGACCAATGACATGATACAATTCGTGG
GAGACATGGCCCTTCCTATTCAGGAGAACTATATGCCACATGAAGAGGGG
GAGCCGTTGCCGCTGGGGAGCATAGCGGCCACGCTCGAATTTGCGAAGCG
CCAGGAGAAGGCCCGCAATGAATCACGGAGCGATTGGAGAGTTCTCGATG
ATGACGGCAGCAACGAATTTCGGGGCAAAGTGCTGAATGTCTCCTTGACT
CTCTCTACGGACATCAAGCAAAAGCTTCCCCCTGAGGGTGTCCGATGGCT
CTATCTGCGGACTGAATGCAAGAAAATTATGAATGGCCAGATGGATATGC
AGGTTCTCATTTTTAATGAAAGGATGGATCTCATTGCTATCAGTCGTCAA
GTGGCGGTTCTTGTTCCCGCGAAGTCGAAGATTCAGAAGTTGTGATTATT
ATTGGTGGATTTACAGCCTGCATTATGACCAAATATGCTCTCCATCATGC
CTCCCAACACCCCGAACTGCAGAACCAGGTTGACCTTCGCTACTCTGAAG
TTCACTTCCACCGTCCGATATTTGCCTCAACGTCAATTACCCTGACCTTG
CGAGAGGTGCATATCTCCAAAGAAGGGTCTACCCTTTATGTCGAATCACT
CCAGAATGGCAAACTCACCACTTCTGCTCATATCAGATGGCAACAGATTC
ACTTCCCACAAGCCTGTCCCATGCGTTAGGCTCTACGCTCTTGAGCACGC
GTCAATGTGTCGTGCAACTTCCCTCAGATATCGCGGTCGGCTCTG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012768KJC3_012768Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012768-T1KJC3_012768-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012768-T1.cdsKJC3_012768-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012768-T1.utr3p1KJC3_012768-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012768-T1.exon3KJC3_012768-T1.exon3Aspergillus niger KJC3exon
KJC3_012768-T1.exon2KJC3_012768-T1.exon2Aspergillus niger KJC3exon
KJC3_012768-T1.exon1KJC3_012768-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012768-T1.utr5p1KJC3_012768-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR029069
DBxrefPFAM:PF13622
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4532400..4533978 -
Powered by Drupal