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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4946348..4947796+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012917-T1 ID=KJC3_012917-T1|Name=KJC3_012917-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1449bp|location=Sequence derived from alignment at ch8:4946348..4947796+ (Aspergillus niger KJC3)
CTGATATTTATCGATCTTCTTGCGCTTTCTCAAAACACAAAATGCCCATC
GGAAGCGACCTGCTGGCCAGCATGGCCAAGAGAAAACTTGCTCGCAGTGC
TCGTGTGGCTAGTTGGGATCAGAAGGGCCTCAACGAAGATGCCTTTGTTG
TGTTACCAGGAGAGTCCATCGTTCTTGCCGATCTTGAAGGACCCGGTGCC
ATCACTCACCTGTGGTTTGTGCAGACATGCCGCAAGATCCTGGGCCCTGG
GTTGATTCCATACTCCAAGTCCGGCGTTGCGATGATGGAAATCCACAACG
CTCTCGGCCTGAACTACGAAGTCAGTGATCCCGACTACTATCGCAAAGTG
CTCATCAAGATGTACTGGGACGACTCGACCACTCCAAACGTGATTGCGCC
TATCGGCGACTTTTTCTGTCTCGGTCATTCTATGGCTGCCAACTTTCAGT
CTCTCCCATTTACGGTGTCGGTTAAGCCGTCAGAGGAGAAGAAATTTGGT
GGCGCTGCAGCGTTCAACTGCTACCTTACGATGCCCTTCAACAAACGAGC
GCGTATTGAGATTGAGAACGAAAACGACGAGGCTTATTTTCAATATTTTT
ATATAGACTATGAGCTGTATGCGGAGCCTCTCCCGGCCGATACGCTATAC
TTTCATGCACACTGGCGACGCATGAATCCCACCAACGGATGGGCACCGTC
TCGCATTCAGACCAACAGCCTCGAGACCCAGATACCAAATCTCGATGGGA
AGGATAACTACGTTATTTTGGAGACGGAAGGCGCTGGCCAGTACATTGGC
TGCAACCACTCCGTCGCGCACTTCCAGGGCACGTGGTGGGGCGAAGGCGA
CGACATGATCTTCATCGACGATGACACTTGGCCGCCGAGTATGCACGGCA
CTGGTGGAGAGGATTATTTCACGCAAGGCTGGGGCATGCAGAAGAACGCG
TATCCCTTCTGCGGATCTATCATTCACGAAGAGGACGTGCCCAACTACCA
GGTCAGCTACCGCTGGCACCTTACGGATCCCGTGCGCTTCAACAAAAAGA
TCAAAGTAACCCTTGAATCTGGACATGCCAACCACTTGCGCGATGATTGG
AGCACTACCGCGTACTGGTACCAGACTCTGCCCGGACCTAAGCTCGAAAT
ACTGCCTGTGGAGAAACGCATTCCTCGCAAGCCCCAATTCCCACCGTCGG
ACGATGTGCCTGAGCCACATGTCAACAGCATGAGTGCGCAGCAGCAAGCT
ATGGTTAAGCAGCGCGATGAGCGGATGGCGGCCTTTGTCAAAGATCGGAA
CGAGTGGCTACAGAGAAGGGCGGGCGATTCTCAAGAGCGCGCGCGTAACA
ATGTCATCATCTGTGAGGACATCCGCCGTCGTTTCCTACAGGGCCTGGGA
GTGTAGGCCTGGAGGCACAAGTTTTGAGTAGAGTCACATAGCTTATTCC back to topCoding sequence (CDS) from alignment at ch8:4946348..4947796+ >KJC3_012917-T1 ID=KJC3_012917-T1|Name=KJC3_012917-T1|organism=Aspergillus niger KJC3|type=CDS|length=1365bp|location=Sequence derived from alignment at ch8:4946348..4947796+ (Aspergillus niger KJC3)
ATGCCCATCGGAAGCGACCTGCTGGCCAGCATGGCCAAGAGAAAACTTGC
TCGCAGTGCTCGTGTGGCTAGTTGGGATCAGAAGGGCCTCAACGAAGATG
CCTTTGTTGTGTTACCAGGAGAGTCCATCGTTCTTGCCGATCTTGAAGGA
CCCGGTGCCATCACTCACCTGTGGTTTGTGCAGACATGCCGCAAGATCCT
GGGCCCTGGGTTGATTCCATACTCCAAGTCCGGCGTTGCGATGATGGAAA
TCCACAACGCTCTCGGCCTGAACTACGAAGTCAGTGATCCCGACTACTAT
CGCAAAGTGCTCATCAAGATGTACTGGGACGACTCGACCACTCCAAACGT
GATTGCGCCTATCGGCGACTTTTTCTGTCTCGGTCATTCTATGGCTGCCA
ACTTTCAGTCTCTCCCATTTACGGTGTCGGTTAAGCCGTCAGAGGAGAAG
AAATTTGGTGGCGCTGCAGCGTTCAACTGCTACCTTACGATGCCCTTCAA
CAAACGAGCGCGTATTGAGATTGAGAACGAAAACGACGAGGCTTATTTTC
AATATTTTTATATAGACTATGAGCTGTATGCGGAGCCTCTCCCGGCCGAT
ACGCTATACTTTCATGCACACTGGCGACGCATGAATCCCACCAACGGATG
GGCACCGTCTCGCATTCAGACCAACAGCCTCGAGACCCAGATACCAAATC
TCGATGGGAAGGATAACTACGTTATTTTGGAGACGGAAGGCGCTGGCCAG
TACATTGGCTGCAACCACTCCGTCGCGCACTTCCAGGGCACGTGGTGGGG
CGAAGGCGACGACATGATCTTCATCGACGATGACACTTGGCCGCCGAGTA
TGCACGGCACTGGTGGAGAGGATTATTTCACGCAAGGCTGGGGCATGCAG
AAGAACGCGTATCCCTTCTGCGGATCTATCATTCACGAAGAGGACGTGCC
CAACTACCAGGTCAGCTACCGCTGGCACCTTACGGATCCCGTGCGCTTCA
ACAAAAAGATCAAAGTAACCCTTGAATCTGGACATGCCAACCACTTGCGC
GATGATTGGAGCACTACCGCGTACTGGTACCAGACTCTGCCCGGACCTAA
GCTCGAAATACTGCCTGTGGAGAAACGCATTCCTCGCAAGCCCCAATTCC
CACCGTCGGACGATGTGCCTGAGCCACATGTCAACAGCATGAGTGCGCAG
CAGCAAGCTATGGTTAAGCAGCGCGATGAGCGGATGGCGGCCTTTGTCAA
AGATCGGAACGAGTGGCTACAGAGAAGGGCGGGCGATTCTCAAGAGCGCG
CGCGTAACAATGTCATCATCTGTGAGGACATCCGCCGTCGTTTCCTACAG
GGCCTGGGAGTGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012917-T1.utr5p1 | KJC3_012917-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012917-T1.utr3p1 | KJC3_012917-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021345 |
| DBxref | PFAM:PF11175 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4946348..4947796 + |
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