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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:281965..284855- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012957-T1 ID=KJC3_012957-T1|Name=KJC3_012957-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2891bp|location=Sequence derived from alignment at JC12F:281965..284855- (Aspergillus niger KJC3)
GGCTCTTTCCCCGAAGGTCACCATGTCTCACCCGCAACAACAATGTGCGG
TCCGTGAATTTGTGTTTGGGGCCTAGTCTGCTGACTTCCTCATGGCTCAA
CTATAATGAGGGGAGATAGGCTATTCAGCGTTAGGCTGCGCTCAGTACGA
CGTTGTTCTTAAAAGATCAATAGCCAGGTCGCCATGATTCCCAGGATTGT
CATCAAGCATGCGGCCAACACACCAAGCTCGCATCGAAACCGAGGAGAAG
GCATTGGAAGCCTACCGCCAGGAGCGCTACCAGGGTAGCGCCCGAGTCCG
CCTGGATTGTCTGACCTTCGAGAATGGCTTTGGTCGCTTGATGGACGACG
GCCGAAATGCCCTCCGAATGGAGCAGATCCTTGAGATACAAGGGTGCCTC
CGTATCAATCGAGAGTACCATGTGCCCGTCTTGGTCCAAGCCACGGACTG
GGGCTCCCACATCAGGCTATTGCCGTGCGACACGGAGCCGTTTCCCGAGC
TGATCGTGCCCTTGAGCATGTCGCTGCGCGCCTTAGGCCACGAGAATGTC
ATCGCCGCAGCGCGAAAAAAGCTCTACGGCGAGAACCGATGGTGGGTGGT
CGATGTGTATGTGGAGGATCCTAGTAAGTTGTCTTTGAAGTCATTCCGAG
TCTCAGCGCGTGTGCCCCTCCCCGTTCACCTGCTAAGTGTGAGTCGCCAG
ATGAGCAACCACAAAGACAAACTCTCCATTCCCATCTCGTCCGCTCGCTC
CGAGAGCATTTTCCAAACCAACGCCGACCGCCGGACGGATTGATCTACGA
AAGAATTCGGTTTTATCAAGGAAAGCTGGGCCATCCGCCGGACGAACATG
CCGAGGCGGTGTGGTGGACCGTCCTCCGACACGACCCCAAGAGTAAGAAG
CATGTATATCTCCGGGCCTTTCTCCAACATCCCAGTTTACCTGCAGCATT
TGATGCCCTGCTCCTTATTCCGGGGCTTTGGGCCAAAATGCAACTGGGCG
TGCTGCATACCATGGTGTCACTGCGATGTGACGAGGTGAGTGGCCCAAGT
GTCTACGAGATGAAAGACTCTTCTAAGAACCCGTTATCTCTAGCCCATCC
TGTCCTACCTCGAAACCATCCGCACTGTCTGGATGGATCGTATTTTCGAC
GGGAGCAACACCCTTCCTGTTCACGCGGACGCAGAGACCGTTCACGCGCT
GGAATCTCAAGTCCCAAAGCTCTCGGAACCGGACCGGGAATATCTGCGAT
CTCGGATGATGGACGACCGGACGTTGTTTCCATCGATCGACGAGTCCGAC
ACACGGGCGGCATTGTGGGAGCGACTGAAGCAGATCGATACCCCTATTCC
CACCCTAGGGACGTTCTTCCAGGACCTCCGTTTCTTAGGTGTTGCCAGCA
AGGTGATGAAGGCTCTTCTTCTTCCACCAGAGGACCTGGGCTCGAAGAAG
GCCAAGAAGATCACTATCGACTGTGAACTCGGTACGCAGCATCGGGCCGA
TGGCAGCGTGTCATTAAGAGAGACAAGACTGCAAGTACGGCGGGGGTTGC
ACGAGCTCTGGCGCTTCAGCTTCCAATACGGGCTTGACATGACCGAGATT
GCACGTCGTCAGCCGCATAAGAGGAAGAAAGCGTGTAGCTCCTATCCTGT
CCCGAATTGCTCGACATCGGTTGACCGAATGGCGTTGTGGCGCCACTTCT
TCTGGCTGGCTGACCAACACGGATTTCGGATCCCGGCCATAGCCGAGTTT
ATGCCCGGACGAGTGACCCTGCCCACTCCGCAATCTCCGGAGGGCCTTGG
TAGCACCGAACAGGATGAAGCAGTGAATCGACGTTGCGGTATCCCATACG
CTGATACGGTCGATGCGGATCGCTTCGCCCTGGAAGGGGGCAGACTATGG
CAGCCCTGGGAGTCCCCACAGGTTTCCGCTGTGTTCTTCCGACGGTCGCA
GTTCCAGACCTTCTTTCGTTACCTTTGGGATAGGAGTGGAATCAATCAGG
CTACAAACGCCGAGGACGAATCGGCAGCGAGCGAGGAAGCCGCGGCGGTA
GATCCGGAGATCCCAGATTGTGATATTGAGCATCCGATGCCCTCGCCAAG
TCTCTCACAGCTGCCTGAAAGAAGCAATTCAATCGATTGGTTCATGGAAA
TGTGGGACTGCGGGTTGGGAGGGATGGCAATGCCCGCGGGCGATCTAGTC
GTGGTCGTCACCATCCCAAATCATGAACCAAGAAGACTTGCGCTGCCAAA
TGACGAATCACTAATCAACGAGCTTTTCCATGGTTTGAAGATGCGCAAGT
TCAGCCTCCACAGTACAGATCACCGCAATGTAACAGAAGAGGAAAATCTC
CACGTCTGGCATCTGAGGAACCCAGGCCAGAATGTTCTAGCCAGTTTGAC
CGAAGAGAATGTACAGGATTATACGACATCCGACGGGAATCGGCTTAAAA
GGAGGAGGAAGGGGCTGTCTGAGGCCATAACTGACATAGTTGCATGGGTG
GACGAGCAAATTTTCAGACTATCCACTCATGCTCTTACTTACAGTTGGAA
TGTACAAGAAGAGGAGGAGTATTGACTGGGCTGGGAAAGATTCAGTATGT
TTCTCTTGTATCCACAATGGGTAAACCATGGCGACAAGAAAGACATCCTG
GATCGATGGTGCAGTACTACAGCTTTAAGGCACTTCATATTATCATAGCG
CAAGGACTATTCTCGGATTGTAGTACGGGAGTATGAATCACGAGCTCTCG
TAGTACAATGTACCCCCCGGCTGGTAAAATGACATTTTCCGCAGTATACT
CTGAGTATGATTGGTTGTCTTGACGGTGGTCGGTCTTTCTCTACAATCGC
GAGCCTTGGCATTAATCCGAGTCATAACGCCCATGTTCCAG back to topCoding sequence (CDS) from alignment at JC12F:281965..284855- >KJC3_012957-T1 ID=KJC3_012957-T1|Name=KJC3_012957-T1|organism=Aspergillus niger KJC3|type=CDS|length=3060bp|location=Sequence derived from alignment at JC12F:281965..284855- (Aspergillus niger KJC3)
CCCATCCTGTCCTACCTCGAAACCATCCGCACTGTCTGGATGGATCGTAT
TTTCGACGGGAGCAACACCCTTCCTGTTCACGCGGACGCAGAGACCGTTC
ACGCGCTGGAATCTCAAGTCCCAAAGCTCTCGGAACCGGACCGGGAATAT
CTGCGATCTCGGATGATGGACGACCGGACGTTGTTTCCATCGATCGACGA
GTCCGACACACGGGCGGCATTGTGGGAGCGACTGAAGCAGATCGATACCC
CTATTCCCACCCTAGGGACGTTCTTCCAGGACCTCCGTTTCTTAGGTGTT
GCCAGCAAGGTGATGAAGGCTCTTCTTCTTCCACCAGAGGACCTGGGCTC
GAAGAAGGCCAAGAAGATCACTATCGACTGTGAACTCGGTACGCAGCATC
GGGCCGATGGCAGCGTGTCATTAAGAGAGACAAGACTGCAAGTACGGCGG
GGGTTGCACGAGCTCTGGCGCTTCAGCTTCCAATACGGGCTTGACATGAC
CGAGATTGCACGTCGTCAGCCGCATAAGAGGAAGAAAGCGTGTAGCTCCT
ATCCTGTCCCGAATTGCTCGACATCGGTTGACCGAATGGCGTTGTGGCGC
CACTTCTTCTGGCTGGCTGACCAACACGGATTTCGGATCCCGGCCATAGC
CGAGTTTATGCCCGGACGAGTGACCCTGCCCACTCCGCAATCTCCGGAGG
GCCTTGGTAGCACCGAACAGGATGAAGCAGTGAATCGACGTTGCGGTATC
CCATACGCTGATACGGTCGATGCGGATCGCTTCGCCCTGGAAGGGGGCAG
ACTATGGCAGCCCTGGGAGTCCCCACAGGTTTCCGCTGTGTTCTTCCGAC
GGTCGCAGTTCCAGACCTTCTTTCGTTACCTTTGGGATAGGAGTGGAATC
AATCAGGCTACAAACGCCGAGGACGAATCGGCAGCGAGCGAGGAAGCCGC
GGCGGTAGATCCGGAGATCCCAGATTGTGATATTGAGCATCCGATGCCCT
CGCCAAGTCTCTCACAGCTGCCTGAAAGAAGCAATTCAATCGATTGGTTC
ATGGAAATGTGGGACTGCGGGTTGGGAGGGATGGCAATGCCCGCGGGCGA
TCTAGTCGTGGTCGTCACCATCCCAAATCATGAACCAAGAAGACTTGCGC
TGCCAAATGACGAATCACTAATCAACGAGCTTTTCCATGGTTTGAAGATG
CGCAAGTTCAGCCTCCACAGTACAGATCACCGCAATGTAACAGAAGAGGA
AAATCTCCACGTCTGGCATCTGAGGAACCCAGGCCAGAATGTTCTAGCCA
GTTTGACCGAAGAGAATGTACAGGATTATACGACATCCGACGGGAATCGG
CTTAAAAGGAGGAGGAAGGGGCTGTCTGAGGCCATAACTGACATAGTTGC
ATGGGTGGACGAGCAAATTTTCAGACTATCCACTCATGCTCTTACTTACA
GTTGGAATGTACAAGAAGAGGAGGAGTATTGAATGCAACTGGGCGTGCTG
CATACCATGGTGTCACTGCGATGTGACGAGCCCATCCTGTCCTACCTCGA
AACCATCCGCACTGTCTGGATGGATCGTATTTTCGACGGGAGCAACACCC
TTCCTGTTCACGCGGACGCAGAGACCGTTCACGCGCTGGAATCTCAAGTC
CCAAAGCTCTCGGAACCGGACCGGGAATATCTGCGATCTCGGATGATGGA
CGACCGGACGTTGTTTCCATCGATCGACGAGTCCGACACACGGGCGGCAT
TGTGGGAGCGACTGAAGCAGATCGATACCCCTATTCCCACCCTAGGGACG
TTCTTCCAGGACCTCCGTTTCTTAGGTGTTGCCAGCAAGGTGATGAAGGC
TCTTCTTCTTCCACCAGAGGACCTGGGCTCGAAGAAGGCCAAGAAGATCA
CTATCGACTGTGAACTCGGTACGCAGCATCGGGCCGATGGCAGCGTGTCA
TTAAGAGAGACAAGACTGCAAGTACGGCGGGGGTTGCACGAGCTCTGGCG
CTTCAGCTTCCAATACGGGCTTGACATGACCGAGATTGCACGTCGTCAGC
CGCATAAGAGGAAGAAAGCGTGTAGCTCCTATCCTGTCCCGAATTGCTCG
ACATCGGTTGACCGAATGGCGTTGTGGCGCCACTTCTTCTGGCTGGCTGA
CCAACACGGATTTCGGATCCCGGCCATAGCCGAGTTTATGCCCGGACGAG
TGACCCTGCCCACTCCGCAATCTCCGGAGGGCCTTGGTAGCACCGAACAG
GATGAAGCAGTGAATCGACGTTGCGGTATCCCATACGCTGATACGGTCGA
TGCGGATCGCTTCGCCCTGGAAGGGGGCAGACTATGGCAGCCCTGGGAGT
CCCCACAGGTTTCCGCTGTGTTCTTCCGACGGTCGCAGTTCCAGACCTTC
TTTCGTTACCTTTGGGATAGGAGTGGAATCAATCAGGCTACAAACGCCGA
GGACGAATCGGCAGCGAGCGAGGAAGCCGCGGCGGTAGATCCGGAGATCC
CAGATTGTGATATTGAGCATCCGATGCCCTCGCCAAGTCTCTCACAGCTG
CCTGAAAGAAGCAATTCAATCGATTGGTTCATGGAAATGTGGGACTGCGG
GTTGGGAGGGATGGCAATGCCCGCGGGCGATCTAGTCGTGGTCGTCACCA
TCCCAAATCATGAACCAAGAAGACTTGCGCTGCCAAATGACGAATCACTA
ATCAACGAGCTTTTCCATGGTTTGAAGATGCGCAAGTTCAGCCTCCACAG
TACAGATCACCGCAATGTAACAGAAGAGGAAAATCTCCACGTCTGGCATC
TGAGGAACCCAGGCCAGAATGTTCTAGCCAGTTTGACCGAAGAGAATGTA
CAGGATTATACGACATCCGACGGGAATCGGCTTAAAAGGAGGAGGAAGGG
GCTGTCTGAGGCCATAACTGACATAGTTGCATGGGTGGACGAGCAAATTT
TCAGACTATCCACTCATGCTCTTACTTACAGTTGGAATGTACAAGAAGAG
GAGGAGTATTGAATGCAACTGGGCGTGCTGCATACCATGGTGTCACTGCG
ATGTGACGAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012957-T1.utr3p1 | KJC3_012957-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012957-T1.utr5p1 | KJC3_012957-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR022198 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC12F | supercontig | JC12F:281965..284855 - |
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