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Sequences
The following sequences are available for this feature:
mRNA from alignment at JC12F:341455..343368+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012958-T1 ID=KJC3_012958-T1|Name=KJC3_012958-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1914bp|location=Sequence derived from alignment at JC12F:341455..343368+ (Aspergillus niger KJC3)
CCGGAACTCTACTCCCTACACATCGTCGGCTGTGACTGGTACGTCTCTAG
GACAGGGGTCCACGTGTGGCAGTAGGTCAAGTCCCACCAGCCATGATCGG
AGAGAATTCCAGTATCTACATCGGACGAGCAAGCCATAGCTGTAGCGTCA
TTGGCCAAGTTAGAGTGGAAGACCTCTGATCCATGCCTGGCCTTTATAAA
GACTCGGGGCTGCCATCGGGGTCCGTCTAAATATCAAATTGCGCTTGTTT
ACCACCTCATTTGTTTGTTACTGGCTTTGGAATGATCGTCTTGCCATTCG
ACGAAGGCTCTACCCGCTTAGCCTTGTGGAAGCATGTCAGAATTATCTGT
CGCCACAACTAAGCCAACTGAAATTGGAACCGAGGCGTCCACCTCTCTCC
AAGCCACACCAGGAGACCTGATGTCTGAGCCACCACCGCCATATTTCCAG
GCGTGGTTCATGCCTGGTACCGGTTGTGAGGAACTCAGCCAGCGGCTCCC
GTGCGTCTCCGATGGTCTTCCCCAAGCTTCTGGGAAACTCGCTGTGGTAA
GCGCGCACACCCATTTTTAAACTAGAAGCTGCAAAAGTATCACACTCTGA
CGGTCTTAGAGCTTCGATCAGCCTGTCCCTGTGCTAGAGTTTGCGGCCAA
TGACCCATACTACTTGGTTCCACAGCCGGTGAGAAGCGTTCCCACTCCGC
CTCAGCTGGAAACCAGGTGTACCTGCTGGCCTTCTGCTAATCTCAATAGA
TCCATGACAACACCCAAGCGCATGAGGACAAGCTGATACCGGAAGAAGGC
AGTGACGCAGATCACACGAAGCCGGAAGCTCTGTGCCGGAAGACTGGACT
TCGGAAGTCGAGTTGCTTCGAAGCCCAGACAAGGGATGGCCAAGCCAAAT
ATGCAGCAACAGGGAGTGAAAACCCATGTCTACCATGTCCCTTAAGTGAA
CTGAACGACGGCATGCAGGACATCCCGGTTAGAGACATGTACGCCTGGGT
GCACCGCCCGGTCGCGACGCGCCGCCAGGAGGCACGGCAACGGCGTCAAA
GAATCCCACGCCCACTTAACTCATTCATACTGTACCGGCTGGCATACAAT
GATCGAGTTAAATACTGGCTCGGCCGGAATGATCACCAGACCATCTCCAG
ACTCAGCGGACAGAGCTGGAAGATGGAAGCCCCTCACATTCGGAAGGAAT
ACGAGACGCTCGCGGAGATGGAGAAACGGAACCATGCCACGGCGCATCCG
GGATATCGCTTTTCGCTGTCGAACAAGCGGGGAAAGTCGCGGACTGCAAA
AGGCCATTCTCAGGAGTTGGCGTTGCGTTCGAAGGCGTTCTCCAACTTCG
GCCAGGACTCACGGCCTGCTGCTTGGGCCCCTTCGGTGGATAATAATCGC
GCTTGTGAACGTTCGATAGGAACTTTTCCTGCGGAAGAGGGAAACCTCAT
CCAGAGCTGTTCCTTGAGCCCAACTGGCTTTATGCCACCGGGCAGTGCCG
TTTCGATATGGGAGCAGTGGACGTCCTATTCCCAGACGACCTCTGCCGAG
TATAACTCCAAAGGCACCCAGGCTTGTTTGCCTGTCGCCACGGGGCAACC
GGGGAAACCTGACTCTGCTTGCTTTGTTTCCCAACCGGCAGCTCCTGGAA
TCGATGCTGCCAATCGTCGGTCTGCTTCACTGCCCCTGTCTATTCCATAT
GAGATATATAGTGTTTTTTCTGGGGAATGGCTTATTGAAGGAAAGTAGTT
GGCTGGGACTGCAGGCTTGGAGATAGAAGATGATTTCGGCGGCGTGTATC
ATCATAACTCTCTCATTCGTGTGTGATTGCCTCGGACGCGAGAGTCTTGT
ACGAGGGTCTTGTACATAGCCATATATGGCTGTCTTGTATCGTTCATGTA
TGAGAAAGAAATCA back to topCoding sequence (CDS) from alignment at JC12F:341455..343368+ >KJC3_012958-T1 ID=KJC3_012958-T1|Name=KJC3_012958-T1|organism=Aspergillus niger KJC3|type=CDS|length=3843bp|location=Sequence derived from alignment at JC12F:341455..343368+ (Aspergillus niger KJC3)
ATGTCAGAATTATCTGTCGCCACAACTAAGCCAACTGAAATTGGAACCGA
GGCGTCCACCTCTCTCCAAGCCACACCAGGAGACCTGATGTCTGAGCCAC
CACCGCCATATTTCCAGGCGTGGTTCATGCCTGGTACCGGTTGTGAGGAA
CTCAGCCAGCGGCTCCCGTGCGTCTCCGATGGTCTTCCCCAAGCTTCTGG
GAAACTCGCTGTGAGCTTCGATCAGCCTGTCCCTGTGCTAGAGTTTGCGG
CCAATGACCCATACTACTTGGTTCCACAGCCGATCCATGACAACACCCAA
GCGCATGAGGACAAGCTGATACCGGAAGAAGGCAGTGACGCAGATCACAC
GAAGCCGGAAGCTCTGTGCCGGAAGACTGGACTTCGGAAGTCGAGTTGCT
TCGAAGCCCAGACAAGGGATGGCCAAGCCAAATATGCAGCAACAGGGAGT
GAAAACCCATGTCTACCATGTCCCTTAAGTGAACTGAACGACGGCATGCA
GGACATCCCGGTTAGAGACATGTACGCCTGGGTGCACCGCCCGGTCGCGA
CGCGCCGCCAGGAGGCACGGCAACGGCGTCAAAGAATCCCACGCCCACTT
AACTCATTCATACTGTACCGGCTGGCATACAATGATCGAGTTAAATACTG
GCTCGGCCGGAATGATCACCAGACCATCTCCAGACTCAGCGGACAGAGCT
GGAAGATGGAAGCCCCTCACATTCGGAAGGAATACGAGACGCTCGCGGAG
ATGGAGAAACGGAACCATGCCACGGCGCATCCGGGATATCGCTTTTCGCT
GTCGAACAAGCGGGGAAAGTCGCGGACTGCAAAAGGCCATTCTCAGGAGT
TGGCGTTGCGTTCGAAGGCGTTCTCCAACTTCGGCCAGGACTCACGGCCT
GCTGCTTGGGCCCCTTCGGTGGATAATAATCGCGCTTGTGAACGTTCGAT
AGGAACTTTTCCTGCGGAAGAGGGAAACCTCATCCAGAGCTGTTCCTTGA
GCCCAACTGGCTTTATGCCACCGGGCAGTGCCGTTTCGATATGGGAGCAG
TGGACGTCCTATTCCCAGACGACCTCTGCCGAGTATAACTCCAAAGGCAC
CCAGGCTTGTTTGCCTGTCGCCACGGGGCAACCGGGGAAACCTGACTCTG
CTTGCTTTGTTTCCCAACCGGCAGCTCCTGGAATCGATGCTGCCAATCGT
CGGTCTGCTTCACTGCCCCTGTCTATTCCATATGAGATATATAGTGTTTT
TTCTGGGGAATGGCTTATTGAAGGAAAGTAGATGTCAGAATTATCTGTCG
CCACAACTAAGCCAACTGAAATTGGAACCGAGGCGTCCACCTCTCTCCAA
GCCACACCAGGAGACCTGATGTCTGAGCCACCACCGCCATATTTCCAGGC
GTGGTTCATGCCTGGTACCGGTTGTGAGGAACTCAGCCAGCGGCTCCCGT
GCGTCTCCGATGGTCTTCCCCAAGCTTCTGGGAAACTCGCTGTGAGCTTC
GATCAGCCTGTCCCTGTGCTAGAGTTTGCGGCCAATGACCCATACTACTT
GGTTCCACAGCCGATCCATGACAACACCCAAGCGCATGAGGACAAGCTGA
TACCGGAAGAAGGCAGTGACGCAGATCACACGAAGCCGGAAGCTCTGTGC
CGGAAGACTGGACTTCGGAAGTCGAGTTGCTTCGAAGCCCAGACAAGGGA
TGGCCAAGCCAAATATGCAGCAACAGGGAGTGAAAACCCATGTCTACCAT
GTCCCTTAAGTGAACTGAACGACGGCATGCAGGACATCCCGGTTAGAGAC
ATGTACGCCTGGGTGCACCGCCCGGTCGCGACGCGCCGCCAGGAGGCACG
GCAACGGCGTCAAAGAATCCCACGCCCACTTAACTCATTCATACTGTACC
GGCTGGCATACAATGATCGAGTTAAATACTGGCTCGGCCGGAATGATCAC
CAGACCATCTCCAGACTCAGCGGACAGAGCTGGAAGATGGAAGCCCCTCA
CATTCGGAAGGAATACGAGACGCTCGCGGAGATGGAGAAACGGAACCATG
CCACGGCGCATCCGGGATATCGCTTTTCGCTGTCGAACAAGCGGGGAAAG
TCGCGGACTGCAAAAGGCCATTCTCAGGAGTTGGCGTTGCGTTCGAAGGC
GTTCTCCAACTTCGGCCAGGACTCACGGCCTGCTGCTTGGGCCCCTTCGG
TGGATAATAATCGCGCTTGTGAACGTTCGATAGGAACTTTTCCTGCGGAA
GAGGGAAACCTCATCCAGAGCTGTTCCTTGAGCCCAACTGGCTTTATGCC
ACCGGGCAGTGCCGTTTCGATATGGGAGCAGTGGACGTCCTATTCCCAGA
CGACCTCTGCCGAGTATAACTCCAAAGGCACCCAGGCTTGTTTGCCTGTC
GCCACGGGGCAACCGGGGAAACCTGACTCTGCTTGCTTTGTTTCCCAACC
GGCAGCTCCTGGAATCGATGCTGCCAATCGTCGGTCTGCTTCACTGCCCC
TGTCTATTCCATATGAGATATATAGTGTTTTTTCTGGGGAATGGCTTATT
GAAGGAAAGTAGATGTCAGAATTATCTGTCGCCACAACTAAGCCAACTGA
AATTGGAACCGAGGCGTCCACCTCTCTCCAAGCCACACCAGGAGACCTGA
TGTCTGAGCCACCACCGCCATATTTCCAGGCGTGGTTCATGCCTGGTACC
GGTTGTGAGGAACTCAGCCAGCGGCTCCCGTGCGTCTCCGATGGTCTTCC
CCAAGCTTCTGGGAAACTCGCTGTGAGCTTCGATCAGCCTGTCCCTGTGC
TAGAGTTTGCGGCCAATGACCCATACTACTTGGTTCCACAGCCGATCCAT
GACAACACCCAAGCGCATGAGGACAAGCTGATACCGGAAGAAGGCAGTGA
CGCAGATCACACGAAGCCGGAAGCTCTGTGCCGGAAGACTGGACTTCGGA
AGTCGAGTTGCTTCGAAGCCCAGACAAGGGATGGCCAAGCCAAATATGCA
GCAACAGGGAGTGAAAACCCATGTCTACCATGTCCCTTAAGTGAACTGAA
CGACGGCATGCAGGACATCCCGGTTAGAGACATGTACGCCTGGGTGCACC
GCCCGGTCGCGACGCGCCGCCAGGAGGCACGGCAACGGCGTCAAAGAATC
CCACGCCCACTTAACTCATTCATACTGTACCGGCTGGCATACAATGATCG
AGTTAAATACTGGCTCGGCCGGAATGATCACCAGACCATCTCCAGACTCA
GCGGACAGAGCTGGAAGATGGAAGCCCCTCACATTCGGAAGGAATACGAG
ACGCTCGCGGAGATGGAGAAACGGAACCATGCCACGGCGCATCCGGGATA
TCGCTTTTCGCTGTCGAACAAGCGGGGAAAGTCGCGGACTGCAAAAGGCC
ATTCTCAGGAGTTGGCGTTGCGTTCGAAGGCGTTCTCCAACTTCGGCCAG
GACTCACGGCCTGCTGCTTGGGCCCCTTCGGTGGATAATAATCGCGCTTG
TGAACGTTCGATAGGAACTTTTCCTGCGGAAGAGGGAAACCTCATCCAGA
GCTGTTCCTTGAGCCCAACTGGCTTTATGCCACCGGGCAGTGCCGTTTCG
ATATGGGAGCAGTGGACGTCCTATTCCCAGACGACCTCTGCCGAGTATAA
CTCCAAAGGCACCCAGGCTTGTTTGCCTGTCGCCACGGGGCAACCGGGGA
AACCTGACTCTGCTTGCTTTGTTTCCCAACCGGCAGCTCCTGGAATCGAT
GCTGCCAATCGTCGGTCTGCTTCACTGCCCCTGTCTATTCCATATGAGAT
ATATAGTGTTTTTTCTGGGGAATGGCTTATTGAAGGAAAGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012958-T1.utr5p1 | KJC3_012958-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012958-T1.utr3p1 | KJC3_012958-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036910 |
| DBxref | InterPro:IPR009071 |
| DBxref | PFAM:PF00505 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| JC12F | supercontig | JC12F:341455..343368 + |
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