You are here

KJC3_012996-T2, KJC3_012996-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012996-T2
Unique NameKJC3_012996-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:3039438..3042165-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012996-T2 ID=KJC3_012996-T2|Name=KJC3_012996-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2728bp|location=Sequence derived from alignment at ch1:3039438..3042165- (Aspergillus niger KJC3)
GTTCAGGGCAGGCGAGTGCTGCAACTCCGACTTATTTTGATTTCAAGTAT ATGTACCTTTCCAGACACCGCACGTCGGCCCCAGGTATACTCCGCCAATT CCTTTCCAATGGTCCAATCCTGAAATCGCCAACGGCCTCTACTAGATACT CCGCATCGCGAACTTCGTCGGTTGGAGAGGAAGCTGTGATGTTCAAGAAA GCCGTCAAGGAACATTCAGTAGCGTCAGCGACTCCGCTACAGTCCACGCT TACGCGCAGCAATAATGGAAGTGCTTCGATGAGACCCCCGCCGCCGTCCA CAGGGGTTAAGCGCAAGATTGAGATGGCTACCGTGCGAGAGTCTAATCTG GGGTCCCTCCACGACGGTGTCTACTTCGATGAGAACGACTTCGACGACGA TGACGACCTGGACTTTGAGGAACCCGATCCATTCATTCCCCCTGCCCCCA TAACCAGACCGAGCGTCCCGAAATCCGAACCGCCCAAGTACCCGTCCCTC CATGACATAGCTGCGCAAGAGGAAGATATACCGATAGTCGACTTGACTTC GCCGAGCAAGGTGGCAGCGGAGGTTAAATATCCTGATTTACCTCCAGTTC CAGATGAGAGCGTTCCGCCTTCCAGCAGCATACAAATCCCATGGTCTTCT TCGCCCCCCTCCCACTTCCAACAACCGACCAAGAAGCCTCGAACTTTACC ATGGCTGAAAGACGAGCCGGAACCAGAACCAGAACCACCGTCTCTGAAAC CGCAAACGCCTATACGGCCGAAACGTACGGATCCCTGGAATCAATCATAT AGCGCGATCAAGGATGGGCAAAGGGAACTGCGTCGGCAGAATAAAACTAT GAAAGCACAAGCAAGCGGTCAAATACACAACCCTCGCACGAAGGTGGCTT CAATCTTTCTCAGCGATGAGCAACGCCATGTCCTGGACGCGGTTGTACAG CAAGGGAAGAGTATATTCTTTACAGGATCTGCCGGAACGGGCAAGTCGGT GCTTATGAGGGAAATCATCAAGAAACTGCGTGATAAGTATAAGAAAGAGC CGGACAGGGTTGCGGTAACAGCATCTACTGGCTTAGCAGCGTGTAATATC GAGGGCGTGACTCTCCACAGTTTCGCAGGTATTGGACTGGGGAAGGAACC TGTTCCGGAGCTTGTCAAGAAGGTCAGCATTGGCGTCGGCGGACCACACC AATAGACATTTGCTAACTACCTATAGATCAAGAAGAATCAGAAAGCCCGC AATCGTTGGATGCGCACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGT CGACGGCGATCTCTTCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGA ATAATGGTCGTCCTTTCGGAGGTATACAACTAGTAGTCACCGGTGACTTT TTCCAACTCCCTCCCGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGC ATTCGCAGCTGCGACCTGGAACACCTCCATACAACACACCATCCTCCTAA CCCATATTTTCCGTCAACGAGACCCCGAATTCGCCGACATGCTCAACGAG CTTCGCCTGGGAAAGATCTCACCACGGACCATCGACACATTCAAACAGCT TTCTCGGCCTCTCGACTTCCATGACTCCCTCGAGGCCACCGAACTGTAAG CCTGGCACACGCCCACACCACCAATCCCATCCCAAAATTAAGCACCCAGC TCACTTCACCCCAGGTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGG CGCCCGAATGAGCCGCCTATCTGGCGAAACAATGACCTTCAACGCCGTCG ACAGCGGCACAATCCAAGACCCCCAATTCCGCGAACGCCTACTAGCCAAC TGCATGGCGCCACCAGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCT CATCAAAAACATGGAAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCG TGGCATTCATGGACGAAGCCACCTTCGACTACTACATCGACAACGAGAAC GAATTCTCAGGGGGGGCAGGAGAAGCAGGCAACAACAGCGACGACGAGAT CATGGCTCGCGCACGCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACG GCAGTGGTCCCGGCGGCATAACGCTCACCCGTAAATGGCCCCTCGTATGC TTCGTGCAGCCTGACGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGAC GTGGAAGATCGAGCTTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGG TGCCGCTTATTCTGGCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAG ACGCTGCAGCGGGTAAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCA GGCCTATGTTGCGCTGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCA TGCGGTTCGAGGCGCGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTT TATTCTAAGCTTGTTAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCC GAAGTCGGGTGGTGGTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGG ATTATTTAGAGCATTTATATGGGTGATATGGAAGTGTATATCATTCTTAG ACCATTTGCTTATACTAGGGGCTCATTGTCAGGAGAAGAATGGATTATCA ATCCTTCTTTCTGTGTATTTTGTGATATGACCTGGTGTGGCTGTCTACCG GACTTGCTAATATTAAACTATAGGGATT
back to top

Coding sequence (CDS) from alignment at ch1:3039438..3042165-

>KJC3_012996-T2 ID=KJC3_012996-T2|Name=KJC3_012996-T2|organism=Aspergillus niger KJC3|type=CDS|length=6795bp|location=Sequence derived from alignment at ch1:3039438..3042165- (Aspergillus niger KJC3)
GTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGGCGCCCGAATGAGCC
GCCTATCTGGCGAAACAATGACCTTCAACGCCGTCGACAGCGGCACAATC
CAAGACCCCCAATTCCGCGAACGCCTACTAGCCAACTGCATGGCGCCACC
AGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCTCATCAAAAACATGG
AAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCGTGGCATTCATGGAC
GAAGCCACCTTCGACTACTACATCGACAACGAGAACGAATTCTCAGGGGG
GGCAGGAGAAGCAGGCAACAACAGCGACGACGAGATCATGGCTCGCGCAC
GCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACGGCAGTGGTCCCGGC
GGCATAACGCTCACCCGTAAATGGCCCCTCGTATGCTTCGTGCAGCCTGA
CGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGACGTGGAAGATCGAGC
TTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGGTGCCGCTTATTCTG
GCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAGACGCTGCAGCGGGT
AAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCAGGCCTATGTTGCGC
TGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCATGCGGTTCGAGGCG
CGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTTTATTCTAAGCTTGT
TAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCCGAAGTCGGGTGGTG
GTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGGATTATTTAGAGCAT
TTATATGGGTGAATCAAGAAGAATCAGAAAGCCCGCAATCGTTGGATGCG
CACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGTCGACGGCGATCTCT
TCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGAATAATGGTCGTCCT
TTCGGAGGTATACAACTAGTAGTCACCGGTGACTTTTTCCAACTCCCTCC
CGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGCATTCGCAGCTGCGA
CCTGGAACACCTCCATACAACACACCATCCTCCTAACCCATATTTTCCGT
CAACGAGACCCCGAATTCGCCGACATGCTCAACGAGCTTCGCCTGGGAAA
GATCTCACCACGGACCATCGACACATTCAAACAGCTTTCTCGGCCTCTCG
ACTTCCATGACTCCCTCGAGGCCACCGAACTATGTTCAAGAAAGCCGTCA
AGGAACATTCAGTAGCGTCAGCGACTCCGCTACAGTCCACGCTTACGCGC
AGCAATAATGGAAGTGCTTCGATGAGACCCCCGCCGCCGTCCACAGGGGT
TAAGCGCAAGATTGAGATGGCTACCGTGCGAGAGTCTAATCTGGGGTCCC
TCCACGACGGTGTCTACTTCGATGAGAACGACTTCGACGACGATGACGAC
CTGGACTTTGAGGAACCCGATCCATTCATTCCCCCTGCCCCCATAACCAG
ACCGAGCGTCCCGAAATCCGAACCGCCCAAGTACCCGTCCCTCCATGACA
TAGCTGCGCAAGAGGAAGATATACCGATAGTCGACTTGACTTCGCCGAGC
AAGGTGGCAGCGGAGGTTAAATATCCTGATTTACCTCCAGTTCCAGATGA
GAGCGTTCCGCCTTCCAGCAGCATACAAATCCCATGGTCTTCTTCGCCCC
CCTCCCACTTCCAACAACCGACCAAGAAGCCTCGAACTTTACCATGGCTG
AAAGACGAGCCGGAACCAGAACCAGAACCACCGTCTCTGAAACCGCAAAC
GCCTATACGGCCGAAACGTACGGATCCCTGGAATCAATCATATAGCGCGA
TCAAGGATGGGCAAAGGGAACTGCGTCGGCAGAATAAAACTATGAAAGCA
CAAGCAAGCGGTCAAATACACAACCCTCGCACGAAGGTGGCTTCAATCTT
TCTCAGCGATGAGCAACGCCATGTCCTGGACGCGGTTGTACAGCAAGGGA
AGAGTATATTCTTTACAGGATCTGCCGGAACGGGCAAGTCGGTGCTTATG
AGGGAAATCATCAAGAAACTGCGTGATAAGTATAAGAAAGAGCCGGACAG
GGTTGCGGTAACAGCATCTACTGGCTTAGCAGCGTGTAATATCGAGGGCG
TGACTCTCCACAGTTTCGCAGGTATTGGACTGGGGAAGGAACCTGTTCCG
GAGCTTGTCAAGAAGGTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACG
GCGCCCGAATGAGCCGCCTATCTGGCGAAACAATGACCTTCAACGCCGTC
GACAGCGGCACAATCCAAGACCCCCAATTCCGCGAACGCCTACTAGCCAA
CTGCATGGCGCCACCAGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGC
TCATCAAAAACATGGAAGACACGCTCGTCAACGGCTCCATCGGCCGTGTC
GTGGCATTCATGGACGAAGCCACCTTCGACTACTACATCGACAACGAGAA
CGAATTCTCAGGGGGGGCAGGAGAAGCAGGCAACAACAGCGACGACGAGA
TCATGGCTCGCGCACGCAAGAAACTCAAGCCCATGGCCGCCAACAAGGAC
GGCAGTGGTCCCGGCGGCATAACGCTCACCCGTAAATGGCCCCTCGTATG
CTTCGTGCAGCCTGACGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGA
CGTGGAAGATCGAGCTTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAG
GTGCCGCTTATTCTGGCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCA
GACGCTGCAGCGGGTAAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTC
AGGCCTATGTTGCGCTGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTC
ATGCGGTTCGAGGCGCGCAAGGTCATGGTTCATCCGAAGGTTACCGATTT
TTATTCTAAGCTTGTTAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGC
CGAAGTCGGGTGGTGGTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAG
GATTATTTAGAGCATTTATATGGGTGAATCAAGAAGAATCAGAAAGCCCG
CAATCGTTGGATGCGCACCAAGGTTCTGATCGTCGATGAAGTGTCCATGG
TCGACGGCGATCTCTTCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGG
AATAATGGTCGTCCTTTCGGAGGTATACAACTAGTAGTCACCGGTGACTT
TTTCCAACTCCCTCCCGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCG
CATTCGCAGCTGCGACCTGGAACACCTCCATACAACACACCATCCTCCTA
ACCCATATTTTCCGTCAACGAGACCCCGAATTCGCCGACATGCTCAACGA
GCTTCGCCTGGGAAAGATCTCACCACGGACCATCGACACATTCAAACAGC
TTTCTCGGCCTCTCGACTTCCATGACTCCCTCGAGGCCACCGAACTATGT
TCAAGAAAGCCGTCAAGGAACATTCAGTAGCGTCAGCGACTCCGCTACAG
TCCACGCTTACGCGCAGCAATAATGGAAGTGCTTCGATGAGACCCCCGCC
GCCGTCCACAGGGGTTAAGCGCAAGATTGAGATGGCTACCGTGCGAGAGT
CTAATCTGGGGTCCCTCCACGACGGTGTCTACTTCGATGAGAACGACTTC
GACGACGATGACGACCTGGACTTTGAGGAACCCGATCCATTCATTCCCCC
TGCCCCCATAACCAGACCGAGCGTCCCGAAATCCGAACCGCCCAAGTACC
CGTCCCTCCATGACATAGCTGCGCAAGAGGAAGATATACCGATAGTCGAC
TTGACTTCGCCGAGCAAGGTGGCAGCGGAGGTTAAATATCCTGATTTACC
TCCAGTTCCAGATGAGAGCGTTCCGCCTTCCAGCAGCATACAAATCCCAT
GGTCTTCTTCGCCCCCCTCCCACTTCCAACAACCGACCAAGAAGCCTCGA
ACTTTACCATGGCTGAAAGACGAGCCGGAACCAGAACCAGAACCACCGTC
TCTGAAACCGCAAACGCCTATACGGCCGAAACGTACGGATCCCTGGAATC
AATCATATAGCGCGATCAAGGATGGGCAAAGGGAACTGCGTCGGCAGAAT
AAAACTATGAAAGCACAAGCAAGCGGTCAAATACACAACCCTCGCACGAA
GGTGGCTTCAATCTTTCTCAGCGATGAGCAACGCCATGTCCTGGACGCGG
TTGTACAGCAAGGGAAGAGTATATTCTTTACAGGATCTGCCGGAACGGGC
AAGTCGGTGCTTATGAGGGAAATCATCAAGAAACTGCGTGATAAGTATAA
GAAAGAGCCGGACAGGGTTGCGGTAACAGCATCTACTGGCTTAGCAGCGT
GTAATATCGAGGGCGTGACTCTCCACAGTTTCGCAGGTATTGGACTGGGG
AAGGAACCTGTTCCGGAGCTTGTCAAGAAGGTTCCCCACGCGCCAAGAAG
TCGAGAGCGCCAACGGCGCCCGAATGAGCCGCCTATCTGGCGAAACAATG
ACCTTCAACGCCGTCGACAGCGGCACAATCCAAGACCCCCAATTCCGCGA
ACGCCTACTAGCCAACTGCATGGCGCCACCAGTGATCCACCTCAAAAAGG
GAGCGCAAGTCATGCTCATCAAAAACATGGAAGACACGCTCGTCAACGGC
TCCATCGGCCGTGTCGTGGCATTCATGGACGAAGCCACCTTCGACTACTA
CATCGACAACGAGAACGAATTCTCAGGGGGGGCAGGAGAAGCAGGCAACA
ACAGCGACGACGAGATCATGGCTCGCGCACGCAAGAAACTCAAGCCCATG
GCCGCCAACAAGGACGGCAGTGGTCCCGGCGGCATAACGCTCACCCGTAA
ATGGCCCCTCGTATGCTTCGTGCAGCCTGACGGAACCGAACGCCATCTCC
TCTGCCAGCCGGAGACGTGGAAGATCGAGCTTCCAAACGGAGAGGTGCAG
GCGCAGCGCCAACAGGTGCCGCTTATTCTGGCTTGGGCTTTGTCCATCCA
TAAGGCGCAGGGGCAGACGCTGCAGCGGGTAAAGGTTGATTTGGGCCGCG
TGTTTGAGAAGGGTCAGGCCTATGTTGCGCTGAGTCGTGCGACCTCGAAA
GCTGGTCTTCAGGTCATGCGGTTCGAGGCGCGCAAGGTCATGGTTCATCC
GAAGGTTACCGATTTTTATTCTAAGCTTGTTAGTATTAGTGATGTGATGA
AGGCTTCGAAGAAGCCGAAGTCGGGTGGTGGTGGTGGCCCGGATCCTGAG
GATGATTTCGAGCAGGATTATTTAGAGCATTTATATGGGTGAATCAAGAA
GAATCAGAAAGCCCGCAATCGTTGGATGCGCACCAAGGTTCTGATCGTCG
ATGAAGTGTCCATGGTCGACGGCGATCTCTTCGACAAGCTAGAGGAAATC
GCGCGTCGCATTAGGAATAATGGTCGTCCTTTCGGAGGTATACAACTAGT
AGTCACCGGTGACTTTTTCCAACTCCCTCCCGTCCCAGAGGGCAGCAACC
GAGAAGCCAAATTCGCATTCGCAGCTGCGACCTGGAACACCTCCATACAA
CACACCATCCTCCTAACCCATATTTTCCGTCAACGAGACCCCGAATTCGC
CGACATGCTCAACGAGCTTCGCCTGGGAAAGATCTCACCACGGACCATCG
ACACATTCAAACAGCTTTCTCGGCCTCTCGACTTCCATGACTCCCTCGAG
GCCACCGAACTATGTTCAAGAAAGCCGTCAAGGAACATTCAGTAGCGTCA
GCGACTCCGCTACAGTCCACGCTTACGCGCAGCAATAATGGAAGTGCTTC
GATGAGACCCCCGCCGCCGTCCACAGGGGTTAAGCGCAAGATTGAGATGG
CTACCGTGCGAGAGTCTAATCTGGGGTCCCTCCACGACGGTGTCTACTTC
GATGAGAACGACTTCGACGACGATGACGACCTGGACTTTGAGGAACCCGA
TCCATTCATTCCCCCTGCCCCCATAACCAGACCGAGCGTCCCGAAATCCG
AACCGCCCAAGTACCCGTCCCTCCATGACATAGCTGCGCAAGAGGAAGAT
ATACCGATAGTCGACTTGACTTCGCCGAGCAAGGTGGCAGCGGAGGTTAA
ATATCCTGATTTACCTCCAGTTCCAGATGAGAGCGTTCCGCCTTCCAGCA
GCATACAAATCCCATGGTCTTCTTCGCCCCCCTCCCACTTCCAACAACCG
ACCAAGAAGCCTCGAACTTTACCATGGCTGAAAGACGAGCCGGAACCAGA
ACCAGAACCACCGTCTCTGAAACCGCAAACGCCTATACGGCCGAAACGTA
CGGATCCCTGGAATCAATCATATAGCGCGATCAAGGATGGGCAAAGGGAA
CTGCGTCGGCAGAATAAAACTATGAAAGCACAAGCAAGCGGTCAAATACA
CAACCCTCGCACGAAGGTGGCTTCAATCTTTCTCAGCGATGAGCAACGCC
ATGTCCTGGACGCGGTTGTACAGCAAGGGAAGAGTATATTCTTTACAGGA
TCTGCCGGAACGGGCAAGTCGGTGCTTATGAGGGAAATCATCAAGAAACT
GCGTGATAAGTATAAGAAAGAGCCGGACAGGGTTGCGGTAACAGCATCTA
CTGGCTTAGCAGCGTGTAATATCGAGGGCGTGACTCTCCACAGTTTCGCA
GGTATTGGACTGGGGAAGGAACCTGTTCCGGAGCTTGTCAAGAAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PIF1_1KJC3_012996Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012996-T2KJC3_012996-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012996-T2.cdsKJC3_012996-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012996-T2.utr3p1KJC3_012996-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012996-T2.exon4KJC3_012996-T2.exon4Aspergillus niger KJC3exon
KJC3_012996-T2.exon3KJC3_012996-T2.exon3Aspergillus niger KJC3exon
KJC3_012996-T2.exon2KJC3_012996-T2.exon2Aspergillus niger KJC3exon
KJC3_012996-T2.exon1KJC3_012996-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012996-T2.utr5p2KJC3_012996-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_012996-T2.utr5p1KJC3_012996-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteantiSMASH:Cluster_1.14
NoteantiSMASH:Cluster_1.13
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR010285
DBxrefInterPro:IPR003593
DBxrefPFAM:PF05970
DBxrefPFAM:PF13604
DBxrefPFAM:PF13401
DBxrefPFAM:PF13245
Product variant 2
ProductDNA helicase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:3039438..3042165 -