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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3039438..3042165- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012996-T2 ID=KJC3_012996-T2|Name=KJC3_012996-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2728bp|location=Sequence derived from alignment at ch1:3039438..3042165- (Aspergillus niger KJC3)
GTTCAGGGCAGGCGAGTGCTGCAACTCCGACTTATTTTGATTTCAAGTAT
ATGTACCTTTCCAGACACCGCACGTCGGCCCCAGGTATACTCCGCCAATT
CCTTTCCAATGGTCCAATCCTGAAATCGCCAACGGCCTCTACTAGATACT
CCGCATCGCGAACTTCGTCGGTTGGAGAGGAAGCTGTGATGTTCAAGAAA
GCCGTCAAGGAACATTCAGTAGCGTCAGCGACTCCGCTACAGTCCACGCT
TACGCGCAGCAATAATGGAAGTGCTTCGATGAGACCCCCGCCGCCGTCCA
CAGGGGTTAAGCGCAAGATTGAGATGGCTACCGTGCGAGAGTCTAATCTG
GGGTCCCTCCACGACGGTGTCTACTTCGATGAGAACGACTTCGACGACGA
TGACGACCTGGACTTTGAGGAACCCGATCCATTCATTCCCCCTGCCCCCA
TAACCAGACCGAGCGTCCCGAAATCCGAACCGCCCAAGTACCCGTCCCTC
CATGACATAGCTGCGCAAGAGGAAGATATACCGATAGTCGACTTGACTTC
GCCGAGCAAGGTGGCAGCGGAGGTTAAATATCCTGATTTACCTCCAGTTC
CAGATGAGAGCGTTCCGCCTTCCAGCAGCATACAAATCCCATGGTCTTCT
TCGCCCCCCTCCCACTTCCAACAACCGACCAAGAAGCCTCGAACTTTACC
ATGGCTGAAAGACGAGCCGGAACCAGAACCAGAACCACCGTCTCTGAAAC
CGCAAACGCCTATACGGCCGAAACGTACGGATCCCTGGAATCAATCATAT
AGCGCGATCAAGGATGGGCAAAGGGAACTGCGTCGGCAGAATAAAACTAT
GAAAGCACAAGCAAGCGGTCAAATACACAACCCTCGCACGAAGGTGGCTT
CAATCTTTCTCAGCGATGAGCAACGCCATGTCCTGGACGCGGTTGTACAG
CAAGGGAAGAGTATATTCTTTACAGGATCTGCCGGAACGGGCAAGTCGGT
GCTTATGAGGGAAATCATCAAGAAACTGCGTGATAAGTATAAGAAAGAGC
CGGACAGGGTTGCGGTAACAGCATCTACTGGCTTAGCAGCGTGTAATATC
GAGGGCGTGACTCTCCACAGTTTCGCAGGTATTGGACTGGGGAAGGAACC
TGTTCCGGAGCTTGTCAAGAAGGTCAGCATTGGCGTCGGCGGACCACACC
AATAGACATTTGCTAACTACCTATAGATCAAGAAGAATCAGAAAGCCCGC
AATCGTTGGATGCGCACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGT
CGACGGCGATCTCTTCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGA
ATAATGGTCGTCCTTTCGGAGGTATACAACTAGTAGTCACCGGTGACTTT
TTCCAACTCCCTCCCGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGC
ATTCGCAGCTGCGACCTGGAACACCTCCATACAACACACCATCCTCCTAA
CCCATATTTTCCGTCAACGAGACCCCGAATTCGCCGACATGCTCAACGAG
CTTCGCCTGGGAAAGATCTCACCACGGACCATCGACACATTCAAACAGCT
TTCTCGGCCTCTCGACTTCCATGACTCCCTCGAGGCCACCGAACTGTAAG
CCTGGCACACGCCCACACCACCAATCCCATCCCAAAATTAAGCACCCAGC
TCACTTCACCCCAGGTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGG
CGCCCGAATGAGCCGCCTATCTGGCGAAACAATGACCTTCAACGCCGTCG
ACAGCGGCACAATCCAAGACCCCCAATTCCGCGAACGCCTACTAGCCAAC
TGCATGGCGCCACCAGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCT
CATCAAAAACATGGAAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCG
TGGCATTCATGGACGAAGCCACCTTCGACTACTACATCGACAACGAGAAC
GAATTCTCAGGGGGGGCAGGAGAAGCAGGCAACAACAGCGACGACGAGAT
CATGGCTCGCGCACGCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACG
GCAGTGGTCCCGGCGGCATAACGCTCACCCGTAAATGGCCCCTCGTATGC
TTCGTGCAGCCTGACGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGAC
GTGGAAGATCGAGCTTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGG
TGCCGCTTATTCTGGCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAG
ACGCTGCAGCGGGTAAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCA
GGCCTATGTTGCGCTGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCA
TGCGGTTCGAGGCGCGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTT
TATTCTAAGCTTGTTAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCC
GAAGTCGGGTGGTGGTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGG
ATTATTTAGAGCATTTATATGGGTGATATGGAAGTGTATATCATTCTTAG
ACCATTTGCTTATACTAGGGGCTCATTGTCAGGAGAAGAATGGATTATCA
ATCCTTCTTTCTGTGTATTTTGTGATATGACCTGGTGTGGCTGTCTACCG
GACTTGCTAATATTAAACTATAGGGATT back to topCoding sequence (CDS) from alignment at ch1:3039438..3042165- >KJC3_012996-T2 ID=KJC3_012996-T2|Name=KJC3_012996-T2|organism=Aspergillus niger KJC3|type=CDS|length=6795bp|location=Sequence derived from alignment at ch1:3039438..3042165- (Aspergillus niger KJC3)
GTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACGGCGCCCGAATGAGCC
GCCTATCTGGCGAAACAATGACCTTCAACGCCGTCGACAGCGGCACAATC
CAAGACCCCCAATTCCGCGAACGCCTACTAGCCAACTGCATGGCGCCACC
AGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGCTCATCAAAAACATGG
AAGACACGCTCGTCAACGGCTCCATCGGCCGTGTCGTGGCATTCATGGAC
GAAGCCACCTTCGACTACTACATCGACAACGAGAACGAATTCTCAGGGGG
GGCAGGAGAAGCAGGCAACAACAGCGACGACGAGATCATGGCTCGCGCAC
GCAAGAAACTCAAGCCCATGGCCGCCAACAAGGACGGCAGTGGTCCCGGC
GGCATAACGCTCACCCGTAAATGGCCCCTCGTATGCTTCGTGCAGCCTGA
CGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGACGTGGAAGATCGAGC
TTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAGGTGCCGCTTATTCTG
GCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCAGACGCTGCAGCGGGT
AAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTCAGGCCTATGTTGCGC
TGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTCATGCGGTTCGAGGCG
CGCAAGGTCATGGTTCATCCGAAGGTTACCGATTTTTATTCTAAGCTTGT
TAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGCCGAAGTCGGGTGGTG
GTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAGGATTATTTAGAGCAT
TTATATGGGTGAATCAAGAAGAATCAGAAAGCCCGCAATCGTTGGATGCG
CACCAAGGTTCTGATCGTCGATGAAGTGTCCATGGTCGACGGCGATCTCT
TCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGGAATAATGGTCGTCCT
TTCGGAGGTATACAACTAGTAGTCACCGGTGACTTTTTCCAACTCCCTCC
CGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCGCATTCGCAGCTGCGA
CCTGGAACACCTCCATACAACACACCATCCTCCTAACCCATATTTTCCGT
CAACGAGACCCCGAATTCGCCGACATGCTCAACGAGCTTCGCCTGGGAAA
GATCTCACCACGGACCATCGACACATTCAAACAGCTTTCTCGGCCTCTCG
ACTTCCATGACTCCCTCGAGGCCACCGAACTATGTTCAAGAAAGCCGTCA
AGGAACATTCAGTAGCGTCAGCGACTCCGCTACAGTCCACGCTTACGCGC
AGCAATAATGGAAGTGCTTCGATGAGACCCCCGCCGCCGTCCACAGGGGT
TAAGCGCAAGATTGAGATGGCTACCGTGCGAGAGTCTAATCTGGGGTCCC
TCCACGACGGTGTCTACTTCGATGAGAACGACTTCGACGACGATGACGAC
CTGGACTTTGAGGAACCCGATCCATTCATTCCCCCTGCCCCCATAACCAG
ACCGAGCGTCCCGAAATCCGAACCGCCCAAGTACCCGTCCCTCCATGACA
TAGCTGCGCAAGAGGAAGATATACCGATAGTCGACTTGACTTCGCCGAGC
AAGGTGGCAGCGGAGGTTAAATATCCTGATTTACCTCCAGTTCCAGATGA
GAGCGTTCCGCCTTCCAGCAGCATACAAATCCCATGGTCTTCTTCGCCCC
CCTCCCACTTCCAACAACCGACCAAGAAGCCTCGAACTTTACCATGGCTG
AAAGACGAGCCGGAACCAGAACCAGAACCACCGTCTCTGAAACCGCAAAC
GCCTATACGGCCGAAACGTACGGATCCCTGGAATCAATCATATAGCGCGA
TCAAGGATGGGCAAAGGGAACTGCGTCGGCAGAATAAAACTATGAAAGCA
CAAGCAAGCGGTCAAATACACAACCCTCGCACGAAGGTGGCTTCAATCTT
TCTCAGCGATGAGCAACGCCATGTCCTGGACGCGGTTGTACAGCAAGGGA
AGAGTATATTCTTTACAGGATCTGCCGGAACGGGCAAGTCGGTGCTTATG
AGGGAAATCATCAAGAAACTGCGTGATAAGTATAAGAAAGAGCCGGACAG
GGTTGCGGTAACAGCATCTACTGGCTTAGCAGCGTGTAATATCGAGGGCG
TGACTCTCCACAGTTTCGCAGGTATTGGACTGGGGAAGGAACCTGTTCCG
GAGCTTGTCAAGAAGGTTCCCCACGCGCCAAGAAGTCGAGAGCGCCAACG
GCGCCCGAATGAGCCGCCTATCTGGCGAAACAATGACCTTCAACGCCGTC
GACAGCGGCACAATCCAAGACCCCCAATTCCGCGAACGCCTACTAGCCAA
CTGCATGGCGCCACCAGTGATCCACCTCAAAAAGGGAGCGCAAGTCATGC
TCATCAAAAACATGGAAGACACGCTCGTCAACGGCTCCATCGGCCGTGTC
GTGGCATTCATGGACGAAGCCACCTTCGACTACTACATCGACAACGAGAA
CGAATTCTCAGGGGGGGCAGGAGAAGCAGGCAACAACAGCGACGACGAGA
TCATGGCTCGCGCACGCAAGAAACTCAAGCCCATGGCCGCCAACAAGGAC
GGCAGTGGTCCCGGCGGCATAACGCTCACCCGTAAATGGCCCCTCGTATG
CTTCGTGCAGCCTGACGGAACCGAACGCCATCTCCTCTGCCAGCCGGAGA
CGTGGAAGATCGAGCTTCCAAACGGAGAGGTGCAGGCGCAGCGCCAACAG
GTGCCGCTTATTCTGGCTTGGGCTTTGTCCATCCATAAGGCGCAGGGGCA
GACGCTGCAGCGGGTAAAGGTTGATTTGGGCCGCGTGTTTGAGAAGGGTC
AGGCCTATGTTGCGCTGAGTCGTGCGACCTCGAAAGCTGGTCTTCAGGTC
ATGCGGTTCGAGGCGCGCAAGGTCATGGTTCATCCGAAGGTTACCGATTT
TTATTCTAAGCTTGTTAGTATTAGTGATGTGATGAAGGCTTCGAAGAAGC
CGAAGTCGGGTGGTGGTGGTGGCCCGGATCCTGAGGATGATTTCGAGCAG
GATTATTTAGAGCATTTATATGGGTGAATCAAGAAGAATCAGAAAGCCCG
CAATCGTTGGATGCGCACCAAGGTTCTGATCGTCGATGAAGTGTCCATGG
TCGACGGCGATCTCTTCGACAAGCTAGAGGAAATCGCGCGTCGCATTAGG
AATAATGGTCGTCCTTTCGGAGGTATACAACTAGTAGTCACCGGTGACTT
TTTCCAACTCCCTCCCGTCCCAGAGGGCAGCAACCGAGAAGCCAAATTCG
CATTCGCAGCTGCGACCTGGAACACCTCCATACAACACACCATCCTCCTA
ACCCATATTTTCCGTCAACGAGACCCCGAATTCGCCGACATGCTCAACGA
GCTTCGCCTGGGAAAGATCTCACCACGGACCATCGACACATTCAAACAGC
TTTCTCGGCCTCTCGACTTCCATGACTCCCTCGAGGCCACCGAACTATGT
TCAAGAAAGCCGTCAAGGAACATTCAGTAGCGTCAGCGACTCCGCTACAG
TCCACGCTTACGCGCAGCAATAATGGAAGTGCTTCGATGAGACCCCCGCC
GCCGTCCACAGGGGTTAAGCGCAAGATTGAGATGGCTACCGTGCGAGAGT
CTAATCTGGGGTCCCTCCACGACGGTGTCTACTTCGATGAGAACGACTTC
GACGACGATGACGACCTGGACTTTGAGGAACCCGATCCATTCATTCCCCC
TGCCCCCATAACCAGACCGAGCGTCCCGAAATCCGAACCGCCCAAGTACC
CGTCCCTCCATGACATAGCTGCGCAAGAGGAAGATATACCGATAGTCGAC
TTGACTTCGCCGAGCAAGGTGGCAGCGGAGGTTAAATATCCTGATTTACC
TCCAGTTCCAGATGAGAGCGTTCCGCCTTCCAGCAGCATACAAATCCCAT
GGTCTTCTTCGCCCCCCTCCCACTTCCAACAACCGACCAAGAAGCCTCGA
ACTTTACCATGGCTGAAAGACGAGCCGGAACCAGAACCAGAACCACCGTC
TCTGAAACCGCAAACGCCTATACGGCCGAAACGTACGGATCCCTGGAATC
AATCATATAGCGCGATCAAGGATGGGCAAAGGGAACTGCGTCGGCAGAAT
AAAACTATGAAAGCACAAGCAAGCGGTCAAATACACAACCCTCGCACGAA
GGTGGCTTCAATCTTTCTCAGCGATGAGCAACGCCATGTCCTGGACGCGG
TTGTACAGCAAGGGAAGAGTATATTCTTTACAGGATCTGCCGGAACGGGC
AAGTCGGTGCTTATGAGGGAAATCATCAAGAAACTGCGTGATAAGTATAA
GAAAGAGCCGGACAGGGTTGCGGTAACAGCATCTACTGGCTTAGCAGCGT
GTAATATCGAGGGCGTGACTCTCCACAGTTTCGCAGGTATTGGACTGGGG
AAGGAACCTGTTCCGGAGCTTGTCAAGAAGGTTCCCCACGCGCCAAGAAG
TCGAGAGCGCCAACGGCGCCCGAATGAGCCGCCTATCTGGCGAAACAATG
ACCTTCAACGCCGTCGACAGCGGCACAATCCAAGACCCCCAATTCCGCGA
ACGCCTACTAGCCAACTGCATGGCGCCACCAGTGATCCACCTCAAAAAGG
GAGCGCAAGTCATGCTCATCAAAAACATGGAAGACACGCTCGTCAACGGC
TCCATCGGCCGTGTCGTGGCATTCATGGACGAAGCCACCTTCGACTACTA
CATCGACAACGAGAACGAATTCTCAGGGGGGGCAGGAGAAGCAGGCAACA
ACAGCGACGACGAGATCATGGCTCGCGCACGCAAGAAACTCAAGCCCATG
GCCGCCAACAAGGACGGCAGTGGTCCCGGCGGCATAACGCTCACCCGTAA
ATGGCCCCTCGTATGCTTCGTGCAGCCTGACGGAACCGAACGCCATCTCC
TCTGCCAGCCGGAGACGTGGAAGATCGAGCTTCCAAACGGAGAGGTGCAG
GCGCAGCGCCAACAGGTGCCGCTTATTCTGGCTTGGGCTTTGTCCATCCA
TAAGGCGCAGGGGCAGACGCTGCAGCGGGTAAAGGTTGATTTGGGCCGCG
TGTTTGAGAAGGGTCAGGCCTATGTTGCGCTGAGTCGTGCGACCTCGAAA
GCTGGTCTTCAGGTCATGCGGTTCGAGGCGCGCAAGGTCATGGTTCATCC
GAAGGTTACCGATTTTTATTCTAAGCTTGTTAGTATTAGTGATGTGATGA
AGGCTTCGAAGAAGCCGAAGTCGGGTGGTGGTGGTGGCCCGGATCCTGAG
GATGATTTCGAGCAGGATTATTTAGAGCATTTATATGGGTGAATCAAGAA
GAATCAGAAAGCCCGCAATCGTTGGATGCGCACCAAGGTTCTGATCGTCG
ATGAAGTGTCCATGGTCGACGGCGATCTCTTCGACAAGCTAGAGGAAATC
GCGCGTCGCATTAGGAATAATGGTCGTCCTTTCGGAGGTATACAACTAGT
AGTCACCGGTGACTTTTTCCAACTCCCTCCCGTCCCAGAGGGCAGCAACC
GAGAAGCCAAATTCGCATTCGCAGCTGCGACCTGGAACACCTCCATACAA
CACACCATCCTCCTAACCCATATTTTCCGTCAACGAGACCCCGAATTCGC
CGACATGCTCAACGAGCTTCGCCTGGGAAAGATCTCACCACGGACCATCG
ACACATTCAAACAGCTTTCTCGGCCTCTCGACTTCCATGACTCCCTCGAG
GCCACCGAACTATGTTCAAGAAAGCCGTCAAGGAACATTCAGTAGCGTCA
GCGACTCCGCTACAGTCCACGCTTACGCGCAGCAATAATGGAAGTGCTTC
GATGAGACCCCCGCCGCCGTCCACAGGGGTTAAGCGCAAGATTGAGATGG
CTACCGTGCGAGAGTCTAATCTGGGGTCCCTCCACGACGGTGTCTACTTC
GATGAGAACGACTTCGACGACGATGACGACCTGGACTTTGAGGAACCCGA
TCCATTCATTCCCCCTGCCCCCATAACCAGACCGAGCGTCCCGAAATCCG
AACCGCCCAAGTACCCGTCCCTCCATGACATAGCTGCGCAAGAGGAAGAT
ATACCGATAGTCGACTTGACTTCGCCGAGCAAGGTGGCAGCGGAGGTTAA
ATATCCTGATTTACCTCCAGTTCCAGATGAGAGCGTTCCGCCTTCCAGCA
GCATACAAATCCCATGGTCTTCTTCGCCCCCCTCCCACTTCCAACAACCG
ACCAAGAAGCCTCGAACTTTACCATGGCTGAAAGACGAGCCGGAACCAGA
ACCAGAACCACCGTCTCTGAAACCGCAAACGCCTATACGGCCGAAACGTA
CGGATCCCTGGAATCAATCATATAGCGCGATCAAGGATGGGCAAAGGGAA
CTGCGTCGGCAGAATAAAACTATGAAAGCACAAGCAAGCGGTCAAATACA
CAACCCTCGCACGAAGGTGGCTTCAATCTTTCTCAGCGATGAGCAACGCC
ATGTCCTGGACGCGGTTGTACAGCAAGGGAAGAGTATATTCTTTACAGGA
TCTGCCGGAACGGGCAAGTCGGTGCTTATGAGGGAAATCATCAAGAAACT
GCGTGATAAGTATAAGAAAGAGCCGGACAGGGTTGCGGTAACAGCATCTA
CTGGCTTAGCAGCGTGTAATATCGAGGGCGTGACTCTCCACAGTTTCGCA
GGTATTGGACTGGGGAAGGAACCTGTTCCGGAGCTTGTCAAGAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012996-T2.utr3p1 | KJC3_012996-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1.14 |
| Note | antiSMASH:Cluster_1.13 |
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR010285 |
| DBxref | InterPro:IPR003593 |
| DBxref | PFAM:PF05970 |
| DBxref | PFAM:PF13604 |
| DBxref | PFAM:PF13401 |
| DBxref | PFAM:PF13245 |
| Product | variant 2 |
| Product | DNA helicase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3039438..3042165 - |
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