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KJC3_013003-T2, KJC3_013003-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_013003-T2
Unique NameKJC3_013003-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:267476..270283-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_013003-T2 ID=KJC3_013003-T2|Name=KJC3_013003-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2808bp|location=Sequence derived from alignment at ch3:267476..270283- (Aspergillus niger KJC3)
CCCGACGAACTTGGGGGCTTTTTTGGCATCCAAACAGCGGGGGGAGCGAA
TAGAAACAAGTCCATCTTTGTAACGCTTCTGCCTAAAGATGAGAGCCTCC
TGTCCGTTTGCCCTATTATTCCAGTGCAAGAAGGAGACATGTTGGGAGTC
TTTACTGGGATGATTCGGTACTCAGAGAACTTTGATGCTACATATGGTAT
ACCTGGTCCAAGGGATAAACTTTGGCTGGATTACTCGCAGGTTACCGGAA
CACTAAATCTAATGAGGGCAACACTATCTGACGGGGATGCTAATGTGTCT
CTTCGGTGGGAGCTACTTGAAGAGGGAGGAAAACAAGAGTCATGAATGAT
GTGGAGGGTGTCAGTGCGGGCTGTTAGAGCAATTAATGCATTTGAAGAAC
TTGTCCGTGCTGCTCCTCAGAAGGAACAGTATCTTTTGCACCAGTCGCCG
GCTCACGTACAAAGGGGATTTACCAAATAAAGAAAGCTTCAGCCCATTGC
ATTTTCCTGTTTCATTCTGTATCGAGGCTCAACCCACTAAATAATAGAGC
GGATATCAATTTGATATTCATCCTAGGATATCGAAAATCTGAGTAACCAC
ATGATCTCGTCCTCACGGCTTGGCTCTTTGGCTCCGTGGCTTAGTCATCA
TGGAGATTCTCCTAACTATCTCAGCATGCATGAAGAGTTCGGAGATGGAC
CGAGTGGAGCGCAATAATTTAGCGGTTACTCTGGGATTCGAGCAGTACCA
CCCAGTTTAAGATTGTTGGCCAGCAATCCATGGGTGACATAAAGACCGGG
ACAATAAGCCCACGAGGCAAGTGATCCAATATAGACCACGATTGTGAGAC
CGACATCGGAAAAAGGCAACAAGCTGGCGGTTACAAGCCGTATCGGGTCA
TGGGACAGCGCCTACAAGCAGGAGCATTCAAGCCAAAGCTTCCTGCCCAG
GGATAGAAAGCTAGTAACTTTGGTCCCAGTCCTTAGAACAGTCGTCCGCA
ATCCTGGTCGGACCTTGGGCCGCGGACCGTGAGCCAACTTGGTCTGCGGA
CAGCCAACTGGCATCCCGAACGGTTCGCTGTCCACGTGGGCTACTGATCT
GAAGCTCATGGTCCACTATGGACATAGAACCTACAACAAAGGTCTTAGTC
ACTCTAATTCTCTACTCGAAGTCCAACTATTGTACTGTCCCATCCTCTGT
CCAGAGTGCCGCAGTCTCCTTGGTTCACGCCGTTCCCTCAGATTACTGCT
GCTCGTCTAAAGTGACTACTGTCATAGAAGTTCAATTGTAATGCCAGGGT
TGATTTCAGCCAGCCTAATATTTGCCACTAACCCCATGCGAAGGCTTTGA
CTCACCTGGCTTGCAGCATCATCGACACTACTTTGAGTAGGCTTGTGAAG
GAACAGGCTGGAGAGTAGGTAAGAATAAATAAACATCATGACAAGCTCGC
TTTGGTATGGCATGAATTATGGGATTTTCGGCTGAGGAATGTACCAGTAA
TTTCTTTCACAATCTCTGACCGCAGTGCTTATCCGACCATAAGAGCCTTC
ACCAAATCACTAGTCGAAGAAGGTTCTTAATGCTCTAGGCAGACGTGCTG
GTGCGCAGCGGATGCTTAGGCATTTTGGAGGCTCGGCTACTCGGTGCCGA
ACATTCTCCGGATCTAGTCCACGCTTCTAGATCCGAGATGTCTCCACAGC
CATTGCCCCAGGCTATTATGGCCAGGCTACGCCGCCCAGCCCTACCACTT
GACTCCACGAGCCCCGGTTGCTGTTCTGCCGTTCTTTGTTCCTGTTGAAA
ATAAGTAGTCTATTGGATGACCAAATAGAGCCTTTTCCTAAAATTTTTAT
AACTAGTGTAGCAGCCATCGCTTGTTGCCCTACTACCCTTGGATGGGAGG
GGGTACTACCATAAAGGCAGCCTAATAGGTATGCACCCGTGCTGCATGCT
CACCCTTGGTGAAAAGAATAGGTGATCGTGAACTGGCATCCCGTGTGCCG
GCGTTTGAGACCGACACTAGTATGGTACTTCATCCCTGACCTCCACTCAT
TTATGCCGTATTAGCTGAAGCAGAGAGCACCCTTATATCCCATCATTGTA
AGAGATGGGCTATAATGTCTATTTAGATTGTCTGTCTACCACCCCGTTTC
GCCTTTCGCATACAAATTGGATCGCGGTCACCTAATATCGTCACCCTAGC
TCACCCCAGCTCACCCTCTCCGCGCGTCCTCTCAGCCGACCGGCCATTAT
AAGAGAAATGGAAACTGCACACATCTGTTTCGCGCCTTTACAAGCTTGGT
TCCCCCATTGCCTGGCAGTGTAAGACAAGACAGATATCCGCCATGGCAGC
ACGACCGCGAAGAATACAAAAACGTTTTTCAGATAGCCCGAAATCGAAGC
GCCAACAACAAAGTCGCCGAAAAGATAACTTGTTCTTCAAATCCTTCGAG
TACTGTCATGAGTGTGATGCGGATATATTCATCATGGTCCGAAACAAGAA
AACTGGCCAAATCCTATTCTTTAACTCTGACAGCAACTGGCCCCCATCAG
TGGAGGAGCTGGTACAATATTCTCCTATAAAAATATTGAGAGTACTATTC
TGATAAGATGATATATAGGCTTCGTATTACCCAAAGCCGAAACAGGTCAC
GTGGAAAGAGTTAGCTGCCAGATACACTACCGTAGAGTCACAGAATGTTC
CCAGTGACCAGTCTCAAGCCCGGGCAACAGAAAAAAATCACAAGTAGCGG
GAAAATCCTCAATACTGGAAGTTCAACCACATAACCAATCGCTTCCATCA
GCAGAAAG
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Coding sequence (CDS) from alignment at ch3:267476..270283-

>KJC3_013003-T2 ID=KJC3_013003-T2|Name=KJC3_013003-T2|organism=Aspergillus niger KJC3|type=CDS|length=261bp|location=Sequence derived from alignment at ch3:267476..270283- (Aspergillus niger KJC3)
ATGGCAGCACGACCGCGAAGAATACAAAAACGTTTTTCAGATAGCCCGAA
ATCGAAGCGCCAACAACAAAGTCGCCGAAAAGATAACTTGTTCTTCAAAT
CCTTCGAGTACTGTCATGAGTGTGATGCGGATATATTCATCATGGTCCGA
AACAAGAAAACTGGCCAAATCCTATTCTTTAACTCTGACAGCAACTGGCC
CCCATCAGTGGAGGAGCTGGTACAATATTCTCCTATAAAAATATTGAGAG
TACTATTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_013003KJC3_013003Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013003-T2KJC3_013003-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013003-T2.cdsKJC3_013003-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013003-T2.utr3p1KJC3_013003-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013003-T2.exon3KJC3_013003-T2.exon3Aspergillus niger KJC3exon
KJC3_013003-T2.exon2KJC3_013003-T2.exon2Aspergillus niger KJC3exon
KJC3_013003-T2.exon1KJC3_013003-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_013003-T2.utr5p3KJC3_013003-T2.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_013003-T2.utr5p2KJC3_013003-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_013003-T2.utr5p1KJC3_013003-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036879
DBxrefInterPro:IPR002100
DBxrefPFAM:PF00319
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:267476..270283 -
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