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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:330819..334006+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013006-T1 ID=KJC3_013006-T1|Name=KJC3_013006-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3188bp|location=Sequence derived from alignment at ch3:330819..334006+ (Aspergillus niger KJC3)
GCGTTCACATTGACGTTACTTAGTTTGCCTCAGACGTTGGTTCTGCCAAC
CCCTCTAGCCATTTGTCGCCCAGAAATGCTCGTTAGATCTCCAATAATCT
CTCACCCCTAACTAACCATGAACTGGAAGCATGAATTGGCGTTTTCTTAC
TGTCCTGTAGCGGGATGCGTACGGGTTTTCCGGGTTGGGTCGGGTTTGGG
GGTACCCGCGGGTTGACTGACGCGCAATAAATTGATAGGTCACAAAACAA
CAACGCGACCAAAAAAAGTAAAAAGAAGAGACATCTTCGCTATTTATCAT
GAATCCTCATTCAAAGCACGATAAGGAGGCATGGCCATGGCCTCTACCAC
TTCGTGCTCATCGAGATCGATGTCTCATACATTCAGCCCAGCGCTTTCGA
TTGAGCCATCATCCGATTCATTCCCAGACTCAGACTTCCAAATATCGGTA
AAGCTTCTTCAGCCAACGCTCTTGGTCTTCTGCTGAAAACGTAGTAGCCT
TTTCCACATTCCAGCGAGAGTCTGGATGTCCTTGCCGACAAGCCTCCACC
AACCCTGAGACGCGTCGGATCTGACCGCAGAAAAAATTGGCTTCTTTTCG
AGCCAGCCCAAGAGGATGACTTCCTAAGTTGGTGGCTCGACACTGAATAT
GGTCGACAAATGAACAGACACGGACGTGCCCGGATCAGATGGTCGGTTGA
GTCCCATTCCGCTGAAGTCTGGAAGCAGTTCGACCAAGTGGCGGAGATAC
ATTCAGGACGACCAAAAGTTATCTGCCGTAACTGCATGACGTTGCTAGAT
CACCCGCAACACAAATCACACGGGACAAGCGCAATGGGCAAACATCAGAG
ATCTAGCTCCTGCCGCAAGGGAAAGAAAAAGGTCTCACAGCAATCTCTTA
TCTCGGATTCCATCCAGAGGACCCCAGTTTCTAGTTCTAGCCCAAACAAG
TTCACGAAAGCGCAACTCGAGGAACAGCTCCTGAAAACTATAACGTGCTT
GCGGCTTCCCTTCCAAATTGTGGAAGATAATGAATTCCAGAGACTGCTCA
ACTTGGTCCGCTCTGGGCCCCAAGGAGTGGAACTTCCCTCTGCAAAGACA
CTCCGTCGGAGACTGCGTGAAGCTGTTGTTACCCAACAAGAAATGCAACT
GAGAGATCTTCCTGAAGATGCGAAAGTTTCTCTCGCCTTGGACTGTTGGA
CCAGCCCATTCCAGCAAGCATTCATGGCTATCACAGTCTATTTCATTGAT
AAAGAGTGGAATTATAGAGAGTTGCTCCTTGGTTTCGAGCCTCTGCACGG
TCCTCATTCAGGGGTTAATCTGAGCGACGTCCTGCTTCAGTTACTGCGGG
AACGGCATCTTTTGAGTCGAATCTTCAGCGTAACCACTGACAATGCGACA
AACAACGAGACTTTGGTCCGAGCGCTGCAAGAGACGCTTCTTTCCACTGG
CGCGATCCGTTCTCGGGACTCTATTATCCGGGTTCCATGCATGGCGCATG
TCATCCAGCTTTGTCTAAAGCGGCTTCTGGGGCATATCAAAGCAGCGCCT
CAGAATAAAGAAGTGGCAAATGTATGGTCAGACTCACAGATGAGTTATCT
CAGAAGTTCGGCTGATCATGAGGGCGTGGCTAGCACACTCGGAAAGGTCT
GTTTTCTGTTATCTGGTTGATAGAAAGGACGGAGCTAATGGGGTCTTCCA
ATAGATCAGGTCGTTTGCTACCTTTGTTAATGCAAGTCCCCAACGGCGGG
ATGCGTTCCTGTGTCTTCAGTCAGGTCGGACTCGACTATTTCCAATCCAC
GATGTGCAAACACGCTGGAACTCGACGTTCTTGATGCTCCGGCGGGCGCG
CAAGTTGCGAAACTATATTGATAAATACTGCAATGACCATGACTACTCGC
AATTCAGCATCACTGATGATGGATGGCGACAGATTGATTACCTCCTGCAA
TTGACCAAGCCATTCTTTCAGTTCACCATGGCCCTCATGAAGACAAAAGA
TGTCACGATCCACAGTGTGTTTCTCGTCTACAGAAAGCTGCTGGAACACA
TCGAACGGTCAAATCAACGCTTAAGCAACAAGACAACGCCATGGAAGCGG
GCCATGTATGATGCATTGCTTGCTGCGAAGCAAAAGTTAAAAGAATATTA
TGAAAAGACCTATCGCGATCATGGGTTTCTTTATGGTACAGGAACCTTGC
TCGCACCGCAGTACAAACTCTGCGCCTTTGATGACACGGAATATTCTAAA
TGCCAGAGCGAAACATCCAAACGCTACTGTGATTACTTGAGGAATTGCTT
TGCACAGTACAAACGCGAGACGCCCGAGATGTCGTTTCGGCCGATGCATT
CCTCTTGTCCACAGCAGGCGTCAGAGTTGGACCGGCTCCTCACCCCACTG
AGTACTTCCCAGCTGAGTGCAAGAAGCGAATACGACGAAGTAGACCGATA
TTTGAGAGAGGGTGAGCGAAGACCCTGAGATAATTGTTGCCTCATGGCAA
GCTGACTTCCGCAGGAACCGTCCAGCTGCCGCCGCGAGCCTATTGGAAAG
AGCACGAACATGAATACCCCGTTCTGTCGCGACTTGCTCGCGACTTGCTT
TCCGTTCCGGCCACTGGCGCTGGTGTCGAGCGTCTATTCAACACTGCGCG
AGATATCTGCCACTATCGTCGTGGGTCGCTCAATGAATCGACCATTCAAG
ACCTAATAATGTACAAGTGCTCAGAGATATTTAACCTGGACATTGAGACG
TTGAGCTGCCTTGAAAAATCATCGATTGAGGACGTCGATCAAGAGAGGCT
CGAGGAGGAGGAAGCCATCAAAACAAGTAAAGAAGAATTTGATCCAATCA
GTGATGACGAAGAGGGAGCAATTGAAGACGACGGCCGCGTACTTTCCGCT
GGAGATGTAACAAGCCGAGAATGTATGATGTCAGATGTTTCTCCCACGCA
TGACATCCACGAACAAGATGACGAGGAAGATGACGGGGAGAAGGAGCAGA
ACGAGGAGGAGGCTACTGACGATGAATTGCTTCCACCCCCAATTCAGCAG
CTCCGCGACAGATCTCAAAAAAGGTCCTCAGGGAGGGTCACAGTGCCATC
TAGTAGACTACAAGGTTACGAATTGTATTAGGGCGGGTCACGAATGTATA
GAGTATTAATATCACAATCACTTCATGAATTTCTTCGC back to topCoding sequence (CDS) from alignment at ch3:330819..334006+ >KJC3_013006-T1 ID=KJC3_013006-T1|Name=KJC3_013006-T1|organism=Aspergillus niger KJC3|type=CDS|length=6120bp|location=Sequence derived from alignment at ch3:330819..334006+ (Aspergillus niger KJC3)
ATGGCCATGGCCTCTACCACTTCGTGCTCATCGAGATCGATGTCTCATAC
ATTCAGCCCAGCGCTTTCGATTGAGCCATCATCCGATTCATTCCCAGACT
CAGACTTCCAAATATCGCCTTTTCCACATTCCAGCGAGAGTCTGGATGTC
CTTGCCGACAAGCCTCCACCAACCCTGAGACGCGTCGGATCTGACCGCAG
AAAAAATTGGCTTCTTTTCGAGCCAGCCCAAGAGGATGACTTCCTAAGTT
GGTGGCTCGACACTGAATATGGTCGACAAATGAACAGACACGGACGTGCC
CGGATCAGATGGTCGGTTGAGTCCCATTCCGCTGAAGTCTGGAAGCAGTT
CGACCAAGTGGCGGAGATACATTCAGGACGACCAAAAGTTATCTGCCGTA
ACTGCATGACGTTGCTAGATCACCCGCAACACAAATCACACGGGACAAGC
GCAATGGGCAAACATCAGAGATCTAGCTCCTGCCGCAAGGGAAAGAAAAA
GGTCTCACAGCAATCTCTTATCTCGGATTCCATCCAGAGGACCCCAGTTT
CTAGTTCTAGCCCAAACAAGTTCACGAAAGCGCAACTCGAGGAACAGCTC
CTGAAAACTATAACGTGCTTGCGGCTTCCCTTCCAAATTGTGGAAGATAA
TGAATTCCAGAGACTGCTCAACTTGGTCCGCTCTGGGCCCCAAGGAGTGG
AACTTCCCTCTGCAAAGACACTCCGTCGGAGACTGCGTGAAGCTGTTGTT
ACCCAACAAGAAATGCAACTGAGAGATCTTCCTGAAGATGCGAAAGTTTC
TCTCGCCTTGGACTGTTGGACCAGCCCATTCCAGCAAGCATTCATGGCTA
TCACAGTCTATTTCATTGATAAAGAGTGGAATTATAGAGAGTTGCTCCTT
GGTTTCGAGCCTCTGCACGGTCCTCATTCAGGGGTTAATCTGAGCGACGT
CCTGCTTCAGTTACTGCGGGAACGGCATCTTTTGAGTCGAATCTTCAGCG
TAACCACTGACAATGCGACAAACAACGAGACTTTGGTCCGAGCGCTGCAA
GAGACGCTTCTTTCCACTGGCGCGATCCGTTCTCGGGACTCTATTATCCG
GGTTCCATGCATGGCGCATGTCATCCAGCTTTGTCTAAAGCGGCTTCTGG
GGCATATCAAAGCAGCGCCTCAGAATAAAGAAGTGGCAAATGTATGGTCA
GACTCACAGATGAGTTATCTCAGAAGTTCGGCTGATCATGAGGGCGTGGC
TAGCACACTCGGAAAGATCAGGTCGTTTGCTACCTTTGTTAATGCAAGTC
CCCAACGGCGGGATGCGTTCCTGTGTCTTCAGTCAGGTCGGACTCGACTA
TTTCCAATCCACGATGTGCAAACACGCTGGAACTCGACGTTCTTGATGCT
CCGGCGGGCGCGCAAGTTGCGAAACTATATTGATAAATACTGCAATGACC
ATGACTACTCGCAATTCAGCATCACTGATGATGGATGGCGACAGATTGAT
TACCTCCTGCAATTGACCAAGCCATTCTTTCAGTTCACCATGGCCCTCAT
GAAGACAAAAGATGTCACGATCCACAGTGTGTTTCTCGTCTACAGAAAGC
TGCTGGAACACATCGAACGGTCAAATCAACGCTTAAGCAACAAGACAACG
CCATGGAAGCGGGCCATGTATGATGCATTGCTTGCTGCGAAGCAAAAGTT
AAAAGAATATTATGAAAAGACCTATCGCGATCATGGGTTTCTTTATGGTA
CAGGAACCTTGCTCGCACCGCAGTACAAACTCTGCGCCTTTGATGACACG
GAATATTCTAAATGCCAGAGCGAAACATCCAAACGCTACTGTGATTACTT
GAGGAATTGCTTTGCACAGTACAAACGCGAGACGCCCGAGATGTCGTTTC
GGCCGATGCATTCCTCTTGTCCACAGCAGGCGTCAGAGTTGGACCGGCTC
CTCACCCCACTGAGTACTTCCCAGCTGAGTGCAAGAAGCGAATACGACGA
AGTAGACCGATATTTGAGAGAGGGTGAGCGAAGACCCTGAATGGCCATGG
CCTCTACCACTTCGTGCTCATCGAGATCGATGTCTCATACATTCAGCCCA
GCGCTTTCGATTGAGCCATCATCCGATTCATTCCCAGACTCAGACTTCCA
AATATCGCCTTTTCCACATTCCAGCGAGAGTCTGGATGTCCTTGCCGACA
AGCCTCCACCAACCCTGAGACGCGTCGGATCTGACCGCAGAAAAAATTGG
CTTCTTTTCGAGCCAGCCCAAGAGGATGACTTCCTAAGTTGGTGGCTCGA
CACTGAATATGGTCGACAAATGAACAGACACGGACGTGCCCGGATCAGAT
GGTCGGTTGAGTCCCATTCCGCTGAAGTCTGGAAGCAGTTCGACCAAGTG
GCGGAGATACATTCAGGACGACCAAAAGTTATCTGCCGTAACTGCATGAC
GTTGCTAGATCACCCGCAACACAAATCACACGGGACAAGCGCAATGGGCA
AACATCAGAGATCTAGCTCCTGCCGCAAGGGAAAGAAAAAGGTCTCACAG
CAATCTCTTATCTCGGATTCCATCCAGAGGACCCCAGTTTCTAGTTCTAG
CCCAAACAAGTTCACGAAAGCGCAACTCGAGGAACAGCTCCTGAAAACTA
TAACGTGCTTGCGGCTTCCCTTCCAAATTGTGGAAGATAATGAATTCCAG
AGACTGCTCAACTTGGTCCGCTCTGGGCCCCAAGGAGTGGAACTTCCCTC
TGCAAAGACACTCCGTCGGAGACTGCGTGAAGCTGTTGTTACCCAACAAG
AAATGCAACTGAGAGATCTTCCTGAAGATGCGAAAGTTTCTCTCGCCTTG
GACTGTTGGACCAGCCCATTCCAGCAAGCATTCATGGCTATCACAGTCTA
TTTCATTGATAAAGAGTGGAATTATAGAGAGTTGCTCCTTGGTTTCGAGC
CTCTGCACGGTCCTCATTCAGGGGTTAATCTGAGCGACGTCCTGCTTCAG
TTACTGCGGGAACGGCATCTTTTGAGTCGAATCTTCAGCGTAACCACTGA
CAATGCGACAAACAACGAGACTTTGGTCCGAGCGCTGCAAGAGACGCTTC
TTTCCACTGGCGCGATCCGTTCTCGGGACTCTATTATCCGGGTTCCATGC
ATGGCGCATGTCATCCAGCTTTGTCTAAAGCGGCTTCTGGGGCATATCAA
AGCAGCGCCTCAGAATAAAGAAGTGGCAAATGTATGGTCAGACTCACAGA
TGAGTTATCTCAGAAGTTCGGCTGATCATGAGGGCGTGGCTAGCACACTC
GGAAAGATCAGGTCGTTTGCTACCTTTGTTAATGCAAGTCCCCAACGGCG
GGATGCGTTCCTGTGTCTTCAGTCAGGTCGGACTCGACTATTTCCAATCC
ACGATGTGCAAACACGCTGGAACTCGACGTTCTTGATGCTCCGGCGGGCG
CGCAAGTTGCGAAACTATATTGATAAATACTGCAATGACCATGACTACTC
GCAATTCAGCATCACTGATGATGGATGGCGACAGATTGATTACCTCCTGC
AATTGACCAAGCCATTCTTTCAGTTCACCATGGCCCTCATGAAGACAAAA
GATGTCACGATCCACAGTGTGTTTCTCGTCTACAGAAAGCTGCTGGAACA
CATCGAACGGTCAAATCAACGCTTAAGCAACAAGACAACGCCATGGAAGC
GGGCCATGTATGATGCATTGCTTGCTGCGAAGCAAAAGTTAAAAGAATAT
TATGAAAAGACCTATCGCGATCATGGGTTTCTTTATGGTACAGGAACCTT
GCTCGCACCGCAGTACAAACTCTGCGCCTTTGATGACACGGAATATTCTA
AATGCCAGAGCGAAACATCCAAACGCTACTGTGATTACTTGAGGAATTGC
TTTGCACAGTACAAACGCGAGACGCCCGAGATGTCGTTTCGGCCGATGCA
TTCCTCTTGTCCACAGCAGGCGTCAGAGTTGGACCGGCTCCTCACCCCAC
TGAGTACTTCCCAGCTGAGTGCAAGAAGCGAATACGACGAAGTAGACCGA
TATTTGAGAGAGGGTGAGCGAAGACCCTGAATGGCCATGGCCTCTACCAC
TTCGTGCTCATCGAGATCGATGTCTCATACATTCAGCCCAGCGCTTTCGA
TTGAGCCATCATCCGATTCATTCCCAGACTCAGACTTCCAAATATCGCCT
TTTCCACATTCCAGCGAGAGTCTGGATGTCCTTGCCGACAAGCCTCCACC
AACCCTGAGACGCGTCGGATCTGACCGCAGAAAAAATTGGCTTCTTTTCG
AGCCAGCCCAAGAGGATGACTTCCTAAGTTGGTGGCTCGACACTGAATAT
GGTCGACAAATGAACAGACACGGACGTGCCCGGATCAGATGGTCGGTTGA
GTCCCATTCCGCTGAAGTCTGGAAGCAGTTCGACCAAGTGGCGGAGATAC
ATTCAGGACGACCAAAAGTTATCTGCCGTAACTGCATGACGTTGCTAGAT
CACCCGCAACACAAATCACACGGGACAAGCGCAATGGGCAAACATCAGAG
ATCTAGCTCCTGCCGCAAGGGAAAGAAAAAGGTCTCACAGCAATCTCTTA
TCTCGGATTCCATCCAGAGGACCCCAGTTTCTAGTTCTAGCCCAAACAAG
TTCACGAAAGCGCAACTCGAGGAACAGCTCCTGAAAACTATAACGTGCTT
GCGGCTTCCCTTCCAAATTGTGGAAGATAATGAATTCCAGAGACTGCTCA
ACTTGGTCCGCTCTGGGCCCCAAGGAGTGGAACTTCCCTCTGCAAAGACA
CTCCGTCGGAGACTGCGTGAAGCTGTTGTTACCCAACAAGAAATGCAACT
GAGAGATCTTCCTGAAGATGCGAAAGTTTCTCTCGCCTTGGACTGTTGGA
CCAGCCCATTCCAGCAAGCATTCATGGCTATCACAGTCTATTTCATTGAT
AAAGAGTGGAATTATAGAGAGTTGCTCCTTGGTTTCGAGCCTCTGCACGG
TCCTCATTCAGGGGTTAATCTGAGCGACGTCCTGCTTCAGTTACTGCGGG
AACGGCATCTTTTGAGTCGAATCTTCAGCGTAACCACTGACAATGCGACA
AACAACGAGACTTTGGTCCGAGCGCTGCAAGAGACGCTTCTTTCCACTGG
CGCGATCCGTTCTCGGGACTCTATTATCCGGGTTCCATGCATGGCGCATG
TCATCCAGCTTTGTCTAAAGCGGCTTCTGGGGCATATCAAAGCAGCGCCT
CAGAATAAAGAAGTGGCAAATGTATGGTCAGACTCACAGATGAGTTATCT
CAGAAGTTCGGCTGATCATGAGGGCGTGGCTAGCACACTCGGAAAGATCA
GGTCGTTTGCTACCTTTGTTAATGCAAGTCCCCAACGGCGGGATGCGTTC
CTGTGTCTTCAGTCAGGTCGGACTCGACTATTTCCAATCCACGATGTGCA
AACACGCTGGAACTCGACGTTCTTGATGCTCCGGCGGGCGCGCAAGTTGC
GAAACTATATTGATAAATACTGCAATGACCATGACTACTCGCAATTCAGC
ATCACTGATGATGGATGGCGACAGATTGATTACCTCCTGCAATTGACCAA
GCCATTCTTTCAGTTCACCATGGCCCTCATGAAGACAAAAGATGTCACGA
TCCACAGTGTGTTTCTCGTCTACAGAAAGCTGCTGGAACACATCGAACGG
TCAAATCAACGCTTAAGCAACAAGACAACGCCATGGAAGCGGGCCATGTA
TGATGCATTGCTTGCTGCGAAGCAAAAGTTAAAAGAATATTATGAAAAGA
CCTATCGCGATCATGGGTTTCTTTATGGTACAGGAACCTTGCTCGCACCG
CAGTACAAACTCTGCGCCTTTGATGACACGGAATATTCTAAATGCCAGAG
CGAAACATCCAAACGCTACTGTGATTACTTGAGGAATTGCTTTGCACAGT
ACAAACGCGAGACGCCCGAGATGTCGTTTCGGCCGATGCATTCCTCTTGT
CCACAGCAGGCGTCAGAGTTGGACCGGCTCCTCACCCCACTGAGTACTTC
CCAGCTGAGTGCAAGAAGCGAATACGACGAAGTAGACCGATATTTGAGAG
AGGGTGAGCGAAGACCCTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013006-T1.utr5p1 | KJC3_013006-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013006-T1.utr3p1 | KJC3_013006-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR037220 |
| DBxref | InterPro:IPR012337 |
| DBxref | PFAM:PF05699 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:330819..334006 + |
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