|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:422287..427724+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013008-T1 ID=KJC3_013008-T1|Name=KJC3_013008-T1|organism=Aspergillus niger KJC3|type=mRNA|length=5438bp|location=Sequence derived from alignment at ch3:422287..427724+ (Aspergillus niger KJC3)
GTGGGGAGGAAAAATGTCGGGACGGGCCGAGACGCGAACCCCTGAACCGC
CCGACCGCGACGAACGCGAAAACTCGCCACCGCGATTGGTGAGGCCGAAA
CGCATGACAAGACCACCAGCCCACTATGCTCAAGAGCAAGAGATCGATAC
TGAGCAGAGAAACACGCGCTCCCAGCAAAAGAAGAAGAATCAGGGCAAGC
CAGTCGCCCAACGTGACGCGGCGACTTCGGACGACTCCTCGGCAGAGAGC
GAGGACTCAGACACCTCCAAACTTGTGAAAGAGATTGTTAAGCTCAGGAG
AGAAATCAGACGTCGAGATGAACTACACAAGCAGGAGCTCCACAAAGTCA
AAGAAGAGTTTGGCGCTGCCCTCGCAGAGTTTCGACATGAATTACAGACC
CTGGCGAATCAACCCTCGACACCGCAACCCCACCCCGAGTCATGCGCTCA
GAACAGCCACGAGGAGATCCTCCGCGAAATCCAATCCTTGCGCATTGCAG
TCAATCCTTCGGGATCCCCGTCCTATGCAGATGTCGCCCGTACTCCCCCC
ACCAGCCAACCGAGCAATATACGGACTCTCTCATCATGGAACACGACACC
GACTACCTTCACCGACACGTTATATTGCACGATAGACACCTCGAAGATGG
CAGATACTGCAAACGAGAGACCATCGGCAGGTTCAATTAGGACGGCAGTT
GAGGCCGAGATCCGGACAATGGAAAACTACACGAACTGGCGGTGCCGCGC
TGTCACCGTGGACCCGAAGAACACCAGCCGGATCAGAATTGCTTGCCGAG
ACGAGGCTGAACACCAGCTGGTTAAGAAGGTGGCGGAATCCAAGGTCGGC
GCAGGAGCCCGAGTGCTTCGTGACGAACTCTACCCGATCAAAGTCGACAG
CGTCAACAGAACTGCAGTCCTTGATGAAAACGGTGACATCCGAGCAGGAG
CTGCGGCAGCCTTTGGCGAAGAGAACGAAGCTTCCATCGCTAAGATTGCA
TGGCTCAGCAGAAAGGAGAATGCGAAGGCCTACGGGTCAATGGTCGTTTA
TCTGACCAGAGGCGGTGATGCACGGAGGCTCCTGGCCGACGGGTTCTTCC
ACGCTGGGGGAGAATCCGGCGTGACCAGCACCTTTGAATACCGACCCCGA
CCGATGCAATGCTATAATTGCCAAGAGATTGGGCATAAGGCGTTCCAGTG
TAAGAACGCGCAGAAATGTGCAAAATGTGCCGCGGAGGGCCATCACCACA
GTAGCTGCGATCAAACGATTCCAAAGTGCATTCCATGCGGAGGCCCTCAC
GAATCGTACAGCAAACACTGTCGGAAGCTCTACCCATCGCATCATGAATA
AGACTCTTCGAGTTATTCAACTGAATGTGAGAAAACAAGGGGCAGTGCAC
GAGAGCTTAATGAATGACGAAGAGACTCAGAACGCGGTGGCGTTAGCGAT
CCAGGAACCCCAGGCGAGGAGGATTCAAGGCCGGCTCTTGACTACCCCGA
TGGGACACCACAGATGGACGAAGATGGTTCCCTCTACTTGGAGGGAAGGC
AGGTGGGCAATTCGAAGCATGCTCTGGATTAATAAAGATGTCGAGGCGGA
ACAAGTGCCAATAGAGTCCCCGGATCTCACGGCAGCGGTTATTAGGCTTC
CCGAGCGACTGATTTTCATGGCATCAGTTTACGTGGAAGGGGACAATGCC
TCAGCTTTGGACGACACATGCAATCAACTACTCAACGCAATCACGAATGT
ACGGCGAGATACGGGTGCGGTGGTGGAGATTTTGATTATGGGAGACTTCA
ACCGGCAGGACCAACTCTGGGGAGGAGACGACGTGTCTTTGAGAAGACAA
GGCGAAGCGGACCCAATCATCAATCTCATGAGTGAATACGCTCTCAGCAG
TCTTGTCACACGAGGCACAAAGACATGGCATGGCGGAGGATACAGCGGGG
ACTGCGAGTCGACGATCGACCTGGTCCCGGCCTCAGACAACCTAACAGAC
TCAGTGATTAAGTGTGCTATACTCGGGACGGAGCACGGCTCGGACCACTG
CGCTATTGAGACCGTCTTTGATGCGCCCTGGTCGCTCCCAAAGCATCAGG
GACGACTTCTGTTGAAAAATGCTCCATGGAAAGAGATCAATGCCAGGATA
GCGAACATTCTTGCCGCCACTCCTGCGGAGGGCACAGTGCAGCAGAAAAC
CGACCGGCTCATGTCGGCGGTTTCAGAAGCGGTGCATGCGTTAACACCAA
AGTCAAAACCATCACCATACGCGAAGCGGTGGTGGACCGCTGATTTAACG
CAGCTCCGTTACATACACACATACTGGAGAAATCACGCCCGCTCCGAGCG
GCGGGTGGGACGAAAAGCACCCTACCTGGAGACGATGGCCCGAGGCGCGG
CAAAACAATACCATGATGCCATCCGGCTGCAAAAGAAAAAGCACTGGAAT
CAATTTCTTGCCGACAATGATAACATATGGAAAGCAGCTAGATACCTGAA
GTCGGGAGAAGACGCAGCGTTCGGGAAGATCCCGCAGCTCCTCAGAGCGG
ATGGGACCACGACCACTGATCATACGGAGCAGGCAGAAGAATTGCTGGCC
AAATTCTTCCCGCCCCTGCCGGACAACATTGACGATGAAGGGACTCGACC
ACAAAGAGCGCCAGTCGAGATGCCTGCCATCACGATGGAGGAGATCGAAC
GACAGCTGATGGCGGCAAAGTCTTGGAAGGCACCCGGCGAAGACGGTCTG
CCAGCAATAGTCTGGAAGATGACTTGGCCCATAGTCAAGTACAGAGTCCT
GGATCTCTTCCAGGCGTCGCTGGAAGAAGGCACGTTGCCAAGACAGTGGA
GACATGCGAAGATCATACCGCTCAAAAAGCCGAACAAAGAGAACTACACC
ATTGCCAAAGCATGGAGACCGATTTCGCTCCTCGCGACGCTGGGCAAGAT
ACTGGAATCCGTGGTCGCAGAAAGGATCTCACACGCGGTGGAGACTCACG
GGTTGCTCCCGACCAGCCACTTCGGCGCCCGAAAGCAGCGGTCCGCGGAG
CAAGCACTCGTACTCTTGCAAGAACAAATCTATGCGGCATGGCGCGGCCG
TCGCGTCGTGAGCTTGATCAGCTTCGACGTCAAAGGAGCCTATAACGGAG
TGTGTAAAGAACCGTTGCTTCAGAGAATAAAAGCGCGAGGCATACCAGAG
GATCTACTCCGGTGGGTGGAGGCGTTCTGCTCGGAACGAACAGCAACCAT
CCAAATCAATGGGCAACTGTCTGAGATCCACAGCCTGCCACAGGCGGGAC
TGCCGCAAGGCTCGCCGCTATCCCCGATTCTATTCCTCTTTTTCAACGCA
GACCTCGTACAACGACAAATCGACAGCCAGGGAGGTGCGATTGCGTTCGT
AGATGATTTTACCACATGGGTGACCGGACCAACTGCGCAGAGTAACCGAG
AAGGTATTGAAGCAATCATCAATGAAGCACTTGACTGGGAGAAAAGGAGC
GGCGCGACTTTTAAAGCAGACAAGACAGCCATTATCCACTTCACTCCCAA
AGCTCATAAATCGGACCAGGGGCTCTTCACTATCAAGGGACAAACCGTTG
AGCCCAAAGATCATGTCAAGATCCTGGGCGTCATCATGGATGCGAGACTC
AAGTACAAGGAACATATTGCATGGGCAGCATCCAAAGGCTTGGAGGCAGC
AATGGAGCTGCGGTGACTTCGCGGCCTCTCCCCAGCAACAGCACGGCAGG
TATTCACGTCAACGGTGGCTCCGGCGGTAGACTACACCTCTCATGTCTGG
ATGCACGCCTGTAAGGATAAGGCGATTGGTCCGATCAACCGAGTCCAAAG
GGTGGGAGCACAGGCAATTGTCGGGACATTTCTCACTGTTGCAACCAGTG
TAGCAGAGGCAGAGGCCCACATTGCCACGGCGCAGCACCGTTTTTGGAGG
CAGGCCGTGAAAATGTGGACGGATCTCCATACGCTCCCGGATACCAATCC
GCTCCGCCGAACTACAGCTCGGATCAGGAAATTCAGACGGTTTCACCGTT
CGCCGCTGTACCAGGTGGCAGACGCGCTGAAGAACATTGATATGGAAACA
CTGGAGACTATTAACCCGTTTACATTAGCACCATGGGAGACATGTATGCA
GACTGATGGTGAAGCAATGCCAGACCCGCAGTCTGCACCGGGTGGATCAA
TACAGATCGCGATCAGCAGCTCAGCACGGAACGGGTTTGTAGGATCTGGG
GTAGCTATCGAAAAGCAGCCACCTCGATATCGAAAACCGAAATTAAAGAC
CTTTTCCATGACACTGGGCGCAAGATCAGAGCAAAATCCATTCTCCGCAG
AGCTAGCGGCTATAGCTCATACATTGAACGGGCTGGTGGGACTGAAAGGT
TTCAGGCTCAGGCTGCTCACAAGCAACAAAGCGGCGGCCCTCACGATACA
GAACCCTCGACAACAGTCAGGCCAGGAGTTCGTCTGCCAGACGTACAAGC
TGATGAGCAGACTGCGGAGAAAAGGAAACCATATCGAGATTCTTTGGGTC
CCTACCAGCGAAGACAACAAGTTACTGGGCCTAGCTAAGGAGCAGGCCAG
GGCCGCAACCTATGAGGACGCGATCCCACAAGCACAGGTTTCCAGAATGA
AGTCAACAACGTTGAATCTCGCACGATCCCAAGCAGTCACTACGAAAGCC
TTGCCAGAGGACGTAAGGAGACATGTCAAACGAGTGGATGCCGCACTCCC
AGGGAAGCACACGCGACAGCTGTATGATGGATTATCGTGGAAAGAAGCGA
CCGTGCTGGCCCAACTCCGGACCGGCATGGCAAGATTAAATGGGTATCTT
TACCGGATCAATGTCGCGCAGGCAGACCAGTGTGCATGCGGACAAGCAAG
AGAAACCGTGGAGCATTTCCTCTTCCGGTGTCGGAAGTGGACTACGCAAC
GGATGGCACTGCTACAATGTACTCGAACTCACCGGGGCAATCTCTCCCTC
TGCCTGGGCGGGAAATCGCCTTCCGATGATCAGCAATGGACGCCGAACTT
GGAGGCAGTACGAGCCTCAATACGATTTGCCATCGCCACGGGCCGACTCG
ACGCCACGTAACCATGTCAACCAAGACAACGACACCCTTTCCCCAATTAA
CCTACACCAACCACCTTGTGCCAAGAATGGTAGACGCGCTTCAACTGCCG
AGGATAGGATGTTGAACACTTGAAGAAGCGCCTTCAAGCCAGTCTATTAA
CAAATATACTAACCCACAGGGATTCCTACGATAGTGACAGCTGAGAGGAC
ATATACAGAAAGGATCTATGTATGGGCTCGAAGGAGATACCGCAGATGTA
CATTAGACTTCGTGTTGATAGATTAGTGATAGTTGCCCTTTCGGCTGAGC
CGCCGGGCGTTAATGAATTGTGTGTGTGTGTGTCCAGG back to topCoding sequence (CDS) from alignment at ch3:422287..427724+ >KJC3_013008-T1 ID=KJC3_013008-T1|Name=KJC3_013008-T1|organism=Aspergillus niger KJC3|type=CDS|length=2373bp|location=Sequence derived from alignment at ch3:422287..427724+ (Aspergillus niger KJC3)
ATGAATAAGACTCTTCGAGTTATTCAACTGAATGTGAGAAAACAAGGGGC
AGTGCACGAGAGCTTAATGAATGACGAAGAGACTCAGAACGCGGTGGCGT
TAGCGATCCAGGAACCCCAGGCGAGGAGGATTCAAGGCCGGCTCTTGACT
ACCCCGATGGGACACCACAGATGGACGAAGATGGTTCCCTCTACTTGGAG
GGAAGGCAGGTGGGCAATTCGAAGCATGCTCTGGATTAATAAAGATGTCG
AGGCGGAACAAGTGCCAATAGAGTCCCCGGATCTCACGGCAGCGGTTATT
AGGCTTCCCGAGCGACTGATTTTCATGGCATCAGTTTACGTGGAAGGGGA
CAATGCCTCAGCTTTGGACGACACATGCAATCAACTACTCAACGCAATCA
CGAATGTACGGCGAGATACGGGTGCGGTGGTGGAGATTTTGATTATGGGA
GACTTCAACCGGCAGGACCAACTCTGGGGAGGAGACGACGTGTCTTTGAG
AAGACAAGGCGAAGCGGACCCAATCATCAATCTCATGAGTGAATACGCTC
TCAGCAGTCTTGTCACACGAGGCACAAAGACATGGCATGGCGGAGGATAC
AGCGGGGACTGCGAGTCGACGATCGACCTGGTCCCGGCCTCAGACAACCT
AACAGACTCAGTGATTAAGTGTGCTATACTCGGGACGGAGCACGGCTCGG
ACCACTGCGCTATTGAGACCGTCTTTGATGCGCCCTGGTCGCTCCCAAAG
CATCAGGGACGACTTCTGTTGAAAAATGCTCCATGGAAAGAGATCAATGC
CAGGATAGCGAACATTCTTGCCGCCACTCCTGCGGAGGGCACAGTGCAGC
AGAAAACCGACCGGCTCATGTCGGCGGTTTCAGAAGCGGTGCATGCGTTA
ACACCAAAGTCAAAACCATCACCATACGCGAAGCGGTGGTGGACCGCTGA
TTTAACGCAGCTCCGTTACATACACACATACTGGAGAAATCACGCCCGCT
CCGAGCGGCGGGTGGGACGAAAAGCACCCTACCTGGAGACGATGGCCCGA
GGCGCGGCAAAACAATACCATGATGCCATCCGGCTGCAAAAGAAAAAGCA
CTGGAATCAATTTCTTGCCGACAATGATAACATATGGAAAGCAGCTAGAT
ACCTGAAGTCGGGAGAAGACGCAGCGTTCGGGAAGATCCCGCAGCTCCTC
AGAGCGGATGGGACCACGACCACTGATCATACGGAGCAGGCAGAAGAATT
GCTGGCCAAATTCTTCCCGCCCCTGCCGGACAACATTGACGATGAAGGGA
CTCGACCACAAAGAGCGCCAGTCGAGATGCCTGCCATCACGATGGAGGAG
ATCGAACGACAGCTGATGGCGGCAAAGTCTTGGAAGGCACCCGGCGAAGA
CGGTCTGCCAGCAATAGTCTGGAAGATGACTTGGCCCATAGTCAAGTACA
GAGTCCTGGATCTCTTCCAGGCGTCGCTGGAAGAAGGCACGTTGCCAAGA
CAGTGGAGACATGCGAAGATCATACCGCTCAAAAAGCCGAACAAAGAGAA
CTACACCATTGCCAAAGCATGGAGACCGATTTCGCTCCTCGCGACGCTGG
GCAAGATACTGGAATCCGTGGTCGCAGAAAGGATCTCACACGCGGTGGAG
ACTCACGGGTTGCTCCCGACCAGCCACTTCGGCGCCCGAAAGCAGCGGTC
CGCGGAGCAAGCACTCGTACTCTTGCAAGAACAAATCTATGCGGCATGGC
GCGGCCGTCGCGTCGTGAGCTTGATCAGCTTCGACGTCAAAGGAGCCTAT
AACGGAGTGTGTAAAGAACCGTTGCTTCAGAGAATAAAAGCGCGAGGCAT
ACCAGAGGATCTACTCCGGTGGGTGGAGGCGTTCTGCTCGGAACGAACAG
CAACCATCCAAATCAATGGGCAACTGTCTGAGATCCACAGCCTGCCACAG
GCGGGACTGCCGCAAGGCTCGCCGCTATCCCCGATTCTATTCCTCTTTTT
CAACGCAGACCTCGTACAACGACAAATCGACAGCCAGGGAGGTGCGATTG
CGTTCGTAGATGATTTTACCACATGGGTGACCGGACCAACTGCGCAGAGT
AACCGAGAAGGTATTGAAGCAATCATCAATGAAGCACTTGACTGGGAGAA
AAGGAGCGGCGCGACTTTTAAAGCAGACAAGACAGCCATTATCCACTTCA
CTCCCAAAGCTCATAAATCGGACCAGGGGCTCTTCACTATCAAGGGACAA
ACCGTTGAGCCCAAAGATCATGTCAAGATCCTGGGCGTCATCATGGATGC
GAGACTCAAGTACAAGGAACATATTGCATGGGCAGCATCCAAAGGCTTGG
AGGCAGCAATGGAGCTGCGGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013008-T1.utr5p1 | KJC3_013008-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013008-T1.utr3p1 | KJC3_013008-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR043502 |
| DBxref | InterPro:IPR005135 |
| DBxref | InterPro:IPR036691 |
| DBxref | InterPro:IPR000477 |
| DBxref | PFAM:PF00078 |
| DBxref | PFAM:PF14529 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:422287..427724 + |
|
