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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:560322..561386+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013009-T1 ID=KJC3_013009-T1|Name=KJC3_013009-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1065bp|location=Sequence derived from alignment at ch3:560322..561386+ (Aspergillus niger KJC3)
CTTGGCATGATACCATCTGATGCTCTCAAGCACACCTTTAAGCTTTTACT
CTTAACTGGGGGCTGGCTGGCCCACCTCTGCCCCATACTCTTATCGCGAC
GCACTTGTGAATACTACCCTCATCATCTTGACCTCGTCATCTTAACCTCC
TCATCTCAACCTCCTCATCTCAGCCTCATCAAGCATAGCAAATCAATCGA
ACCGTCCACCTATCTACACCGTTTCTCCAGATCTTGAGATACTAGAACGC
TTACCATGCAACGCCTAAGAAACGCAACAAACTCAATTTTTAATTATGGA
CAAACTGTTGCTCGAGAACATACAACCGCCTTAGTCGCTAGTGGTACCGG
ACTTGCTCTCGCTACAGCACCGATCACCGGCCCTGCAATATTAGGTGCTG
TTGGTTTCAGCGCTGCAGGGCCTGTTGCGGCTTCTTTTGCTGCAGCATGG
CAGTCTTCAATCGGGGTAGTTCAAGCTGGGAGTCTGTTTGCCACCCTACA
GGGAGCTGCAATGGGAGGCGCTGCTGCGGGGACATTTACAACTGCTTCGA
ACATTGGAATTGGCATGGTGGGATCCGTGGCAGTTGGAAAACAATGGACT
GATATAAAGAAAAGACTATGGATGAAACATGATAGCGAACATTTTGAGGA
AGCTGGACATTATGGTAATACATAAATGCCTACCGGTATGCTGCTCAAGG
CTAACATGAATAAAGATGAAAGTCAGCCAGCTGAAGATAACAAAGACGTG
GCAAACAATCCACAAATGCCTGACGTTGATGATTTGCTAGGCACAGAATT
CGCGAAATTTCTCGAGATCGACATGTCTTGAATAGAAGTGTCATATGTAC
TGCTGTACATGTGTGAGAGATCCAACGTGATTTTCTGGGAGGATCTCTGC
TGGCTCGGGAAAATTCTAGTGTGGGAACACGCGCTTGTACGCGCTGGTAC
AGGCTCTGTAGAATATGCTGAGTCATTGGACACCCATTACCACTTAGTAT
AGGAACCTGTACCTGAGGTCATCAGATAATTTATGAAAGACGATTAGTGT
ATCTCGTGATAAGGG back to topCoding sequence (CDS) from alignment at ch3:560322..561386+ >KJC3_013009-T1 ID=KJC3_013009-T1|Name=KJC3_013009-T1|organism=Aspergillus niger KJC3|type=CDS|length=1050bp|location=Sequence derived from alignment at ch3:560322..561386+ (Aspergillus niger KJC3)
ATGCAACGCCTAAGAAACGCAACAAACTCAATTTTTAATTATGGACAAAC
TGTTGCTCGAGAACATACAACCGCCTTAGTCGCTAGTGGTACCGGACTTG
CTCTCGCTACAGCACCGATCACCGGCCCTGCAATATTAGGTGCTGTTGGT
TTCAGCGCTGCAGGGCCTGTTGCGGCTTCTTTTGCTGCAGCATGGCAGTC
TTCAATCGGGGTAGTTCAAGCTGGGAGTCTGTTTGCCACCCTACAGGGAG
CTGCAATGGGAGGCGCTGCTGCGGGGACATTTACAACTGCTTCGAACATT
GGAATTGGCATGGTGGGATCCGTGGCAGTTGGAAAACAATGGACTGATAT
AAAGAAAAGACTATGGATGAAACATGATAGCGAACATTTTGAGGAAGCTG
GACATTATGATGAAAGTCAGCCAGCTGAAGATAACAAAGACGTGGCAAAC
AATCCACAAATGCCTGACGTTGATGATTTGCTAGGCACAGAATTCGCGAA
ATTTCTCGAGATCGACATGTCTTGAATGCAACGCCTAAGAAACGCAACAA
ACTCAATTTTTAATTATGGACAAACTGTTGCTCGAGAACATACAACCGCC
TTAGTCGCTAGTGGTACCGGACTTGCTCTCGCTACAGCACCGATCACCGG
CCCTGCAATATTAGGTGCTGTTGGTTTCAGCGCTGCAGGGCCTGTTGCGG
CTTCTTTTGCTGCAGCATGGCAGTCTTCAATCGGGGTAGTTCAAGCTGGG
AGTCTGTTTGCCACCCTACAGGGAGCTGCAATGGGAGGCGCTGCTGCGGG
GACATTTACAACTGCTTCGAACATTGGAATTGGCATGGTGGGATCCGTGG
CAGTTGGAAAACAATGGACTGATATAAAGAAAAGACTATGGATGAAACAT
GATAGCGAACATTTTGAGGAAGCTGGACATTATGATGAAAGTCAGCCAGC
TGAAGATAACAAAGACGTGGCAAACAATCCACAAATGCCTGACGTTGATG
ATTTGCTAGGCACAGAATTCGCGAAATTTCTCGAGATCGACATGTCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013009-T1.utr5p1 | KJC3_013009-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013009-T1.utr3p1 | KJC3_013009-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009311 |
| DBxref | PFAM:PF06140 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:560322..561386 + |
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