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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2842310..2843275+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013039-T1 ID=KJC3_013039-T1|Name=KJC3_013039-T1|organism=Aspergillus niger KJC3|type=mRNA|length=966bp|location=Sequence derived from alignment at ch3:2842310..2843275+ (Aspergillus niger KJC3)
GCGAGTCGGCCACGTAAGCGAGTCGGCCACCCCATCGAAACTCGTCCACG
CCTCCGAAAGCGATGCTATCCAAACAGCCATTACACCACCAAAAATGCCT
AAATCATCAAAAGAGTTGGTGGAACAAGAGGGCAGGCTCTGTTTAGCAGT
TGAATCTATTCAGAAAGATCATACAAAATCTATTCGTGAAGCTGCACGCG
TTTTTCAAGTTCCCCGATCAACACTTCAAGATCGCCTAAATGGACTCAAA
TTTCGCAAGAATACTAGAGCCAACTCACATAAATTGACCTCTATAGAGGA
AGAATCACTTGAAAAATGGATTATATCACTAGATCAACGTGGTGCACCAC
CAAAGCACTCTCAAGTCCGTGAAATGGCGAATCTACTACTTCAAAAGCAT
GGTCAAAATACAACTATCTCTGTCAGACAAAAATGGATTACCAACTACAT
CTCAAGGCATGATTCCTTGAAAAGTCGATATAGCCGTCAAATCAACTACA
AACGAGCGAAGTGTGAAGAACCTGAAGCTATTCAGATATGGTTTAAACGC
GTACAAACTGCTATATCAACATACGGCATTGTCGATGAAGATATCTATAA
CTTCGATGAAACTGGCTTTGCTATGGGTATCCTGGATACTATTAAAATAG
TAACACGCTTAATATGTCAAGGAAGACCCTTTCTTATACAGCCAGAAAAT
CGCGAATGAATAACTTCAATTGAGTGTATCAACGCTGCTGGATGGATGCT
ACCAGCATATTTAATATTAAAAGCAAAAACACATATTCAAGCTTGGTACG
AAGGAAGTCTACCATCTTCCTAGAAAATTACTATATCCTCAAATAAATAG
ACTACACGAGAGATTGGGGAAGCATGGCTCAAAAATCACTTCATTCCATA
CATCAAAACACGAAGAACAGATCAATATAGCCTCCTCGTATTTAACAGGC
ATGATTCGCATCTAAC back to topCoding sequence (CDS) from alignment at ch3:2842310..2843275+ >KJC3_013039-T1 ID=KJC3_013039-T1|Name=KJC3_013039-T1|organism=Aspergillus niger KJC3|type=CDS|length=615bp|location=Sequence derived from alignment at ch3:2842310..2843275+ (Aspergillus niger KJC3)
ATGCCTAAATCATCAAAAGAGTTGGTGGAACAAGAGGGCAGGCTCTGTTT
AGCAGTTGAATCTATTCAGAAAGATCATACAAAATCTATTCGTGAAGCTG
CACGCGTTTTTCAAGTTCCCCGATCAACACTTCAAGATCGCCTAAATGGA
CTCAAATTTCGCAAGAATACTAGAGCCAACTCACATAAATTGACCTCTAT
AGAGGAAGAATCACTTGAAAAATGGATTATATCACTAGATCAACGTGGTG
CACCACCAAAGCACTCTCAAGTCCGTGAAATGGCGAATCTACTACTTCAA
AAGCATGGTCAAAATACAACTATCTCTGTCAGACAAAAATGGATTACCAA
CTACATCTCAAGGCATGATTCCTTGAAAAGTCGATATAGCCGTCAAATCA
ACTACAAACGAGCGAAGTGTGAAGAACCTGAAGCTATTCAGATATGGTTT
AAACGCGTACAAACTGCTATATCAACATACGGCATTGTCGATGAAGATAT
CTATAACTTCGATGAAACTGGCTTTGCTATGGGTATCCTGGATACTATTA
AAATAGTAACACGCTTAATATGTCAAGGAAGACCCTTTCTTATACAGCCA
GAAAATCGCGAATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013039-T1.utr5p1 | KJC3_013039-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013039-T1.utr3p1 | KJC3_013039-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR007889 |
| DBxref | InterPro:IPR006600 |
| DBxref | PFAM:PF03221 |
| DBxref | PFAM:PF05225 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2842310..2843275 + |
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