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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4218393..4219437- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013087-T1 ID=KJC3_013087-T1|Name=KJC3_013087-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1045bp|location=Sequence derived from alignment at ch6:4218393..4219437- (Aspergillus niger KJC3)
CTCATCTCAACCTCCTCATCTCAACCTCCTCATCTCAACCTCCTCATCTC
AACCTCCTCATCTCAACCTCCTCATCTCAGCCTCATCAAGCATAGCAAAT
TAATCGAACCGTCCACCTATCTACACCGTTTCTCCAGATCTTGAGATACT
AGAACGCTTACCATGGAACGCCTAAGAAACGCAACAACCTCAATGTTTAA
TTATGGACAAACTGTTGCTCGAGAACATACAACCGCCTTAGTCGCTAGTG
GTACCGGACTTGCTCTCGCTACAGCACCGATCACCGGCCCTGCAATATTA
GGTGCTGTTGGTTTCAGCGCTGCAGGGCCTGTTGCGGCTTCTTTTGCTGC
AGCATGGCAGTCTTCAATCGGGGTAGTTCAAGCTGGGAGTCTGTTTGCCA
CCCTACAGGGAGCTGCAATGGGAGGCGCTGCTGCGGGGACATTTACAACT
GCTTCGAATATTGGAATTGGGATGGTGGGATCCGTGGCAGTTGGAAAACA
ATGGACTGATATAAAGAAAAGACTATGGATGAAACATGATAGCGAACATT
TTGAGGAAGCTGGATATTATGGTAATACATAAATGCCTACCGGTATGCTG
CTCAAGGCTAACATGAATAAAGATGAAAGTCAGCCAGCTGAAGATAACAA
AGACGTGGCAAACAACCCACAAATGCCTGACGTTGATGATTTGCTAGGCA
CAGAATTCGCGAAATTTCTCGAGATCGACATGTCTTGAATAGAAGTGTCA
TATGTACTGCTGTACATGTGTGAGAGATCCAACGTGATTTTCTGGGAGGA
TCTCTGCTGGCTCGGGAAAATTCTAGTGTGGGAACACGCGCTTGTACGCG
CTGGTACAGGCTCTGTAGAATATGCTGAGTCATTGGACACCCATTACCAC
TTAGTATAGGAACCTGTACCCGAGGTCATCAGATAATTTATGAAAGACGA
TTAGTGTATCTCGTGATAAGGGTTTCAAAGAAAGTCGAAGACTATAAACA
TTTGCACCGGTTTTTGATCAGCTGTATATATCTAAATATGTGAGC back to topCoding sequence (CDS) from alignment at ch6:4218393..4219437- >KJC3_013087-T1 ID=KJC3_013087-T1|Name=KJC3_013087-T1|organism=Aspergillus niger KJC3|type=CDS|length=1050bp|location=Sequence derived from alignment at ch6:4218393..4219437- (Aspergillus niger KJC3)
ATGAAAGTCAGCCAGCTGAAGATAACAAAGACGTGGCAAACAACCCACAA
ATGCCTGACGTTGATGATTTGCTAGGCACAGAATTCGCGAAATTTCTCGA
GATCGACATGTCTTGAATGGAACGCCTAAGAAACGCAACAACCTCAATGT
TTAATTATGGACAAACTGTTGCTCGAGAACATACAACCGCCTTAGTCGCT
AGTGGTACCGGACTTGCTCTCGCTACAGCACCGATCACCGGCCCTGCAAT
ATTAGGTGCTGTTGGTTTCAGCGCTGCAGGGCCTGTTGCGGCTTCTTTTG
CTGCAGCATGGCAGTCTTCAATCGGGGTAGTTCAAGCTGGGAGTCTGTTT
GCCACCCTACAGGGAGCTGCAATGGGAGGCGCTGCTGCGGGGACATTTAC
AACTGCTTCGAATATTGGAATTGGGATGGTGGGATCCGTGGCAGTTGGAA
AACAATGGACTGATATAAAGAAAAGACTATGGATGAAACATGATAGCGAA
CATTTTGAGGAAGCTGGATATTATGATGAAAGTCAGCCAGCTGAAGATAA
CAAAGACGTGGCAAACAACCCACAAATGCCTGACGTTGATGATTTGCTAG
GCACAGAATTCGCGAAATTTCTCGAGATCGACATGTCTTGAATGGAACGC
CTAAGAAACGCAACAACCTCAATGTTTAATTATGGACAAACTGTTGCTCG
AGAACATACAACCGCCTTAGTCGCTAGTGGTACCGGACTTGCTCTCGCTA
CAGCACCGATCACCGGCCCTGCAATATTAGGTGCTGTTGGTTTCAGCGCT
GCAGGGCCTGTTGCGGCTTCTTTTGCTGCAGCATGGCAGTCTTCAATCGG
GGTAGTTCAAGCTGGGAGTCTGTTTGCCACCCTACAGGGAGCTGCAATGG
GAGGCGCTGCTGCGGGGACATTTACAACTGCTTCGAATATTGGAATTGGG
ATGGTGGGATCCGTGGCAGTTGGAAAACAATGGACTGATATAAAGAAAAG
ACTATGGATGAAACATGATAGCGAACATTTTGAGGAAGCTGGATATTATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013087-T1.utr3p1 | KJC3_013087-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013087-T1.utr5p1 | KJC3_013087-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009311 |
| DBxref | PFAM:PF06140 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4218393..4219437 - |
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