|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3445037..3445723- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KYF_001306-T1 ID=KYF_001306-T1|Name=KYF_001306-T1|organism=Aspergillus niger KYF3|type=mRNA|length=687bp|location=Sequence derived from alignment at ch1:3445037..3445723- (Aspergillus niger KYF3)
ATGAAGGTCACTGCAGCTTTTGCAAGTCTCTTGCTTACGGCCTTCGCGGC
CCCTGCTCCGGAGCCTGTTCTGGTGTCGCGAAGTGCCGGTATCAACTACG
TGCAGAACTACAACGGCAACCTTGGTGACTTCACCTACGACGAGAGTACC
GGGACATTTTCCATGTACTGGGAGGATGGAGTCAGTTCCGACTTCGTCGT
TGGTTTGGGCTGGACCACTGGCTCCTCTAAGTGGGTGACTGTACCCTTTA
GGCTAAATCTCTAGGATCTAACGGTTGTCAGATCTATCACCTACTCTGCC
CAATACAGCGCTTCTAGCTCCAGCTCCTACCTGGCTGTCTACGGCTGGGT
CAACTCTCCTCAGGCCGAATACTACATCGTCGAGGATTACGGTGATTACA
ACCCTTGCAGCTCGGCCACGAGCCTTGGTACCGTGTACTCTGATGGAAGC
ACCTACCAAGTCTGCACCGACACTCGGACGAACGCGCCATCTATCACAGG
AACAAGCACGTTCACGCAGTACTTCTCCGTTCGTGAAAGTACACGCACAT
CCGGAACAGTGACTATCGCCAACCATTTCAATTTCTGGGCGCAGCATGGG
TTCGGCAATAGCAACTTCAATTATCAGGTCATGGCGGTGGAGGCATGGAA
CGGTGCTGGCAGTGCCAGTGTCACGATATCTTCTTAA back to topCoding sequence (CDS) from alignment at ch1:3445037..3445723- >KYF_001306-T1 ID=KYF_001306-T1|Name=KYF_001306-T1|organism=Aspergillus niger KYF3|type=CDS|length=1272bp|location=Sequence derived from alignment at ch1:3445037..3445723- (Aspergillus niger KYF3)
ATCTATCACCTACTCTGCCCAATACAGCGCTTCTAGCTCCAGCTCCTACC
TGGCTGTCTACGGCTGGGTCAACTCTCCTCAGGCCGAATACTACATCGTC
GAGGATTACGGTGATTACAACCCTTGCAGCTCGGCCACGAGCCTTGGTAC
CGTGTACTCTGATGGAAGCACCTACCAAGTCTGCACCGACACTCGGACGA
ACGCGCCATCTATCACAGGAACAAGCACGTTCACGCAGTACTTCTCCGTT
CGTGAAAGTACACGCACATCCGGAACAGTGACTATCGCCAACCATTTCAA
TTTCTGGGCGCAGCATGGGTTCGGCAATAGCAACTTCAATTATCAGGTCA
TGGCGGTGGAGGCATGGAACGGTGCTGGCAGTGCCAGTGTCACGATATCT
TCTTAAATGAAGGTCACTGCAGCTTTTGCAAGTCTCTTGCTTACGGCCTT
CGCGGCCCCTGCTCCGGAGCCTGTTCTGGTGTCGCGAAGTGCCGGTATCA
ACTACGTGCAGAACTACAACGGCAACCTTGGTGACTTCACCTACGACGAG
AGTACCGGGACATTTTCCATGTACTGGGAGGATGGAGTCAGTTCCGACTT
CGTCGTTGGTTTGGGCTGGACCACTGGCTCCTCTAAATCTATCACCTACT
CTGCCCAATACAGCGCTTCTAGCTCCAGCTCCTACCTGGCTGTCTACGGC
TGGGTCAACTCTCCTCAGGCCGAATACTACATCGTCGAGGATTACGGTGA
TTACAACCCTTGCAGCTCGGCCACGAGCCTTGGTACCGTGTACTCTGATG
GAAGCACCTACCAAGTCTGCACCGACACTCGGACGAACGCGCCATCTATC
ACAGGAACAAGCACGTTCACGCAGTACTTCTCCGTTCGTGAAAGTACACG
CACATCCGGAACAGTGACTATCGCCAACCATTTCAATTTCTGGGCGCAGC
ATGGGTTCGGCAATAGCAACTTCAATTATCAGGTCATGGCGGTGGAGGCA
TGGAACGGTGCTGGCAGTGCCAGTGTCACGATATCTTCTTAAATGAAGGT
CACTGCAGCTTTTGCAAGTCTCTTGCTTACGGCCTTCGCGGCCCCTGCTC
CGGAGCCTGTTCTGGTGTCGCGAAGTGCCGGTATCAACTACGTGCAGAAC
TACAACGGCAACCTTGGTGACTTCACCTACGACGAGAGTACCGGGACATT
TTCCATGTACTGGGAGGATGGAGTCAGTTCCGACTTCGTCGTTGGTTTGG
GCTGGACCACTGGCTCCTCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-16) |
| Note | CAZy:GH11 |
| DBxref | InterPro:IPR013320 |
| DBxref | InterPro:IPR018208 |
| DBxref | InterPro:IPR033123 |
| DBxref | InterPro:IPR013319 |
| DBxref | InterPro:IPR001137 |
| DBxref | PFAM:PF00457 |
| Product | 4-beta-xylanase 5 |
| Product | Endo-1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3445037..3445723 - |
|
