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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1783325..1784278+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KYF_001886-T1 ID=KYF_001886-T1|Name=KYF_001886-T1|organism=Aspergillus niger KYF3|type=mRNA|length=954bp|location=Sequence derived from alignment at ch2:1783325..1784278+ (Aspergillus niger KYF3)
ATGGATATCGAACCCACCCTTCCTATTCCGATCTCGTATATTGGGGGTAG
CTACTTTCTCTTCTCAATTGATGCAGTTACGTATGTGAGACGCGAGTATC
ACATTTGCGGCGTCTTAAGCGGCACATTGCCTCAAATCCCACAACAGAAT
GTCTTCCTGGGCTTGCCATTGAAGCTAATGCCGGAAGAGGCCCGGTTGCT
CGTGGAGAAAGGTGTAGCATGCATTGTAGACGAGGTAAAAGTCCAAAAGG
ACGGAATGCGAGCCCTCATGGAGGAGGATCGCAAGAAGTATCTCCGTGAG
CTAGAATCTCAAGGCCAGCATGCTATGCGACTACAGAACGACCGGAAGGA
GCAGCAACGCGAGAAGGCTTTAAAGAAAATAGAAGAAAAGAAGGCCGCAA
AGGCCAAAAAGTCTGCTGAAAGGCAGCAGGAGCAGCAGCCTGCCCCTCTT
AATAATGAGGCTGCTGCTCAAGACCCGGTTGTTGACTTGTTCGCAAATGA
CCAGGAGGGTACTGGCGAAATGTCGCGCCGTTCTTCGACTGCCACTGCTG
CTCCCTTTGGCACTGTCATGGGAGTCACGCCTGCTACATCTTATCCGCCT
CTTCCGTATGAGTGGTCTGCTGAGCAACAGCTACCGCTTCCTGATGTGCC
TTCCTCATACCCATTATTCGCTCACCTTCATTCCGAAGGATACTTCTTAT
CCCCTGGGTTGCGATTCGGGTGTCAGTATCTTGCCTATCCCGGTGATCCT
TTACGGTTCCATTCACACTTCCTGAGTGTGTCTGCTGACTGGGATGAGGA
GTTGGATTTGATGAGCATCGTTGCCGGTGGTCGACTAGGTACTGGTGTGA
AGAAGGGTTTCTTGATTGGAGGAGCTGAGAAGAAGATCGAGGGCTCGGAT
GCTGGAGACCCCAGTAGTGTGAGGACTTTCAGCATTGAATGGGGTGGAAT
GTGA back to topCoding sequence (CDS) from alignment at ch2:1783325..1784278+ >KYF_001886-T1 ID=KYF_001886-T1|Name=KYF_001886-T1|organism=Aspergillus niger KYF3|type=CDS|length=954bp|location=Sequence derived from alignment at ch2:1783325..1784278+ (Aspergillus niger KYF3)
ATGGATATCGAACCCACCCTTCCTATTCCGATCTCGTATATTGGGGGTAG
CTACTTTCTCTTCTCAATTGATGCAGTTACGTATGTGAGACGCGAGTATC
ACATTTGCGGCGTCTTAAGCGGCACATTGCCTCAAATCCCACAACAGAAT
GTCTTCCTGGGCTTGCCATTGAAGCTAATGCCGGAAGAGGCCCGGTTGCT
CGTGGAGAAAGGTGTAGCATGCATTGTAGACGAGGTAAAAGTCCAAAAGG
ACGGAATGCGAGCCCTCATGGAGGAGGATCGCAAGAAGTATCTCCGTGAG
CTAGAATCTCAAGGCCAGCATGCTATGCGACTACAGAACGACCGGAAGGA
GCAGCAACGCGAGAAGGCTTTAAAGAAAATAGAAGAAAAGAAGGCCGCAA
AGGCCAAAAAGTCTGCTGAAAGGCAGCAGGAGCAGCAGCCTGCCCCTCTT
AATAATGAGGCTGCTGCTCAAGACCCGGTTGTTGACTTGTTCGCAAATGA
CCAGGAGGGTACTGGCGAAATGTCGCGCCGTTCTTCGACTGCCACTGCTG
CTCCCTTTGGCACTGTCATGGGAGTCACGCCTGCTACATCTTATCCGCCT
CTTCCGTATGAGTGGTCTGCTGAGCAACAGCTACCGCTTCCTGATGTGCC
TTCCTCATACCCATTATTCGCTCACCTTCATTCCGAAGGATACTTCTTAT
CCCCTGGGTTGCGATTCGGGTGTCAGTATCTTGCCTATCCCGGTGATCCT
TTACGGTTCCATTCACACTTCCTGAGTGTGTCTGCTGACTGGGATGAGGA
GTTGGATTTGATGAGCATCGTTGCCGGTGGTCGACTAGGTACTGGTGTGA
AGAAGGGTTTCTTGATTGGAGGAGCTGAGAAGAAGATCGAGGGCTCGGAT
GCTGGAGACCCCAGTAGTGTGAGGACTTTCAGCATTGAATGGGGTGGAAT
GTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000214 | tRNA-intron endonuclease complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000379 | tRNA-type intron splice site recognition and cleavage |
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000213 | tRNA-intron endonuclease activity |
| GO:0004518 | nuclease activity |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263U71 |
| DBxref | InterPro:IPR036167 |
| DBxref | InterPro:IPR006676 |
| DBxref | InterPro:IPR016690 |
| DBxref | InterPro:IPR006677 |
| DBxref | InterPro:IPR011856 |
| DBxref | PFAM:PF01974 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1783325..1784278 + |
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