You are here

Home

KYF_001887-T1, KYF_001887-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_001887-T1
Unique NameKYF_001887-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1785215..1786008-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_001887-T1 ID=KYF_001887-T1|Name=KYF_001887-T1|organism=Aspergillus niger KYF3|type=mRNA|length=794bp|location=Sequence derived from alignment at ch2:1785215..1786008- (Aspergillus niger KYF3)
ATGACAACCCCCAAACCCCACATCGCACACACGCTCCTCTCGCGCGCGCA
CTCCCCCGACACAGCCTCGCAACTCTTCACCGAGCGCATAAAACAAAAGC
CTCTCTACGTGCGTCCCACGTCCCCAACGCCCGCCGACAACCGCTCGCGC
CGGCGCCTCCATCGCCTCCGCAAGAAAGAGTATTTCCTCCGCAAACAAAA
GCCGCAGCCTTTATCCGCGCGTCAGAAGCGCGCCTCGGGCCTCTACAACC
TCCCCAAGGAAGAATGCAAGTATGCGGTTTTCCAGGAGCTGCATGCCATG
TGGGTGCGGTATATGCAGGATATGCTAGACTTGGGGGCAAAGAAATTCAA
GCCGCCGATGACACCGTTGTCGCATGGGAGTAAGCTCTCCAGTGCGGATT
TTCATGGCGCGGAGGTGGAGGTTGTAAGGAGTCGGTGTGAGGGGAGGGTC
GGGGTTAAGGGGATTGTGGTTAGGGATACGAAGTTTACGTTTGTGGTTGT
TACGAGGGGGGATGAGGTTAAGAGTATGTTTTATTCTTTTTCTTGATGAG
GTTTGGTTTGTGTGTTGCTAATGTGGGTGTGAATCTAGCTATTCCGAAGG
AGCAGACTATTTTCCGGTTTAGTGTGCCTTTGCCTGAGGCGGATGATGCT
GATGGCGCGGCGGTGACTGGGGAGACGAGCGCTGATTCTGCTAAGAAGGA
GCTCGTGTTTGAGCTCCATGGCAGTCAGTTCCAGAATCGTCCGGTTGACA
GGGCGAACAAGAAATTCAAATGGCGGAATGTGGATTATATCTAA
back to top

Coding sequence (CDS) from alignment at ch2:1785215..1786008-

>KYF_001887-T1 ID=KYF_001887-T1|Name=KYF_001887-T1|organism=Aspergillus niger KYF3|type=CDS|length=1458bp|location=Sequence derived from alignment at ch2:1785215..1786008- (Aspergillus niger KYF3)
CTATTCCGAAGGAGCAGACTATTTTCCGGTTTAGTGTGCCTTTGCCTGAG
GCGGATGATGCTGATGGCGCGGCGGTGACTGGGGAGACGAGCGCTGATTC
TGCTAAGAAGGAGCTCGTGTTTGAGCTCCATGGCAGTCAGTTCCAGAATC
GTCCGGTTGACAGGGCGAACAAGAAATTCAAATGGCGGAATGTGGATTAT
ATCTAAATGACAACCCCCAAACCCCACATCGCACACACGCTCCTCTCGCG
CGCGCACTCCCCCGACACAGCCTCGCAACTCTTCACCGAGCGCATAAAAC
AAAAGCCTCTCTACGTGCGTCCCACGTCCCCAACGCCCGCCGACAACCGC
TCGCGCCGGCGCCTCCATCGCCTCCGCAAGAAAGAGTATTTCCTCCGCAA
ACAAAAGCCGCAGCCTTTATCCGCGCGTCAGAAGCGCGCCTCGGGCCTCT
ACAACCTCCCCAAGGAAGAATGCAAGTATGCGGTTTTCCAGGAGCTGCAT
GCCATGTGGGTGCGGTATATGCAGGATATGCTAGACTTGGGGGCAAAGAA
ATTCAAGCCGCCGATGACACCGTTGTCGCATGGGAGTAAGCTCTCCAGTG
CGGATTTTCATGGCGCGGAGGTGGAGGTTGTAAGGAGTCGGTGTGAGGGG
AGGGTCGGGGTTAAGGGGATTGTGGTTAGGGATACGAAGTTTACGTTTGT
GGTTGTTACGAGGGGGGATGAGGTTAAGACTATTCCGAAGGAGCAGACTA
TTTTCCGGTTTAGTGTGCCTTTGCCTGAGGCGGATGATGCTGATGGCGCG
GCGGTGACTGGGGAGACGAGCGCTGATTCTGCTAAGAAGGAGCTCGTGTT
TGAGCTCCATGGCAGTCAGTTCCAGAATCGTCCGGTTGACAGGGCGAACA
AGAAATTCAAATGGCGGAATGTGGATTATATCTAAATGACAACCCCCAAA
CCCCACATCGCACACACGCTCCTCTCGCGCGCGCACTCCCCCGACACAGC
CTCGCAACTCTTCACCGAGCGCATAAAACAAAAGCCTCTCTACGTGCGTC
CCACGTCCCCAACGCCCGCCGACAACCGCTCGCGCCGGCGCCTCCATCGC
CTCCGCAAGAAAGAGTATTTCCTCCGCAAACAAAAGCCGCAGCCTTTATC
CGCGCGTCAGAAGCGCGCCTCGGGCCTCTACAACCTCCCCAAGGAAGAAT
GCAAGTATGCGGTTTTCCAGGAGCTGCATGCCATGTGGGTGCGGTATATG
CAGGATATGCTAGACTTGGGGGCAAAGAAATTCAAGCCGCCGATGACACC
GTTGTCGCATGGGAGTAAGCTCTCCAGTGCGGATTTTCATGGCGCGGAGG
TGGAGGTTGTAAGGAGTCGGTGTGAGGGGAGGGTCGGGGTTAAGGGGATT
GTGGTTAGGGATACGAAGTTTACGTTTGTGGTTGTTACGAGGGGGGATGA
GGTTAAGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030677ribonuclease P complex
Vocabulary: Molecular Function
TermDefinition
GO:0004526ribonuclease P activity
GO:0004540ribonuclease activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001682tRNA 5'-leader removal
GO:0008033tRNA processing
GO:0006396RNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KYF_001887KYF_001887Aspergillus niger KYF3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_001887-T1KYF_001887-T1-proteinAspergillus niger KYF3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_001887-T1.cdsKYF_001887-T1.cdsAspergillus niger KYF3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_001887-T1.exon2KYF_001887-T1.exon2Aspergillus niger KYF3exon
KYF_001887-T1.exon1KYF_001887-T1.exon1Aspergillus niger KYF3exon


Properties
Property NameValue
NoteBUSCO:EOG092644N1
DBxrefInterPro:IPR023534
DBxrefInterPro:IPR023538
DBxrefInterPro:IPR036980
DBxrefInterPro:IPR016848
DBxrefInterPro:IPR002730
DBxrefPFAM:PF01868
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1785215..1786008 -
Powered by Drupal