You are here

Home

KYF_002015-T1, KYF_002015-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_002015-T1
Unique NameKYF_002015-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:2168640..2169057-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_002015-T1 ID=KYF_002015-T1|Name=KYF_002015-T1|organism=Aspergillus niger KYF3|type=mRNA|length=418bp|location=Sequence derived from alignment at ch2:2168640..2169057- (Aspergillus niger KYF3)
ATGACCTCCGGTGCTGAGTCCGGTCCCGACTCCAAGTCTGCTGGCGCTGG
CACCGGCGCCTCTGCTGTCTCCTCCGTCAACCGCCCTTCCTCTCCTACTC
CTCCTGGTGGTCCCCGGGCTGCTATGCGTCGCCGCGCGGCCGCTGACCAC
AAGGAGTCCCTCCGCAATGCCAGACCCAGCTCGACTCGCGCCGCCGGTGC
TGGTGGCTCCTCCGGCACGATGCTCAAGCTCTACACTGACGAGAGCCCCG
GTCTGAGGGTTGACCCCGTTGTTGTCCTGGTTCTCAGTCTGGGCTTCATT
TTCTCCGTCGTTGGTCTCCACGGTAAGTGTGCTTTCCGGGTTGTCTTCTG
GGTGGTGAAGTGGCCTCTAACGCGCATATCCAGTCATTGCCAAGATCACC
CGCAAGTTCTCCTCATAA
back to top

Coding sequence (CDS) from alignment at ch2:2168640..2169057-

>KYF_002015-T1 ID=KYF_002015-T1|Name=KYF_002015-T1|organism=Aspergillus niger KYF3|type=CDS|length=714bp|location=Sequence derived from alignment at ch2:2168640..2169057- (Aspergillus niger KYF3)
TCATTGCCAAGATCACCCGCAAGTTCTCCTCATAAATGACCTCCGGTGCT
GAGTCCGGTCCCGACTCCAAGTCTGCTGGCGCTGGCACCGGCGCCTCTGC
TGTCTCCTCCGTCAACCGCCCTTCCTCTCCTACTCCTCCTGGTGGTCCCC
GGGCTGCTATGCGTCGCCGCGCGGCCGCTGACCACAAGGAGTCCCTCCGC
AATGCCAGACCCAGCTCGACTCGCGCCGCCGGTGCTGGTGGCTCCTCCGG
CACGATGCTCAAGCTCTACACTGACGAGAGCCCCGGTCTGAGGGTTGACC
CCGTTGTTGTCCTGGTTCTCAGTCTGGGCTTCATTTTCTCCGTCGTTGGT
CTCCACGTCATTGCCAAGATCACCCGCAAGTTCTCCTCATAAATGACCTC
CGGTGCTGAGTCCGGTCCCGACTCCAAGTCTGCTGGCGCTGGCACCGGCG
CCTCTGCTGTCTCCTCCGTCAACCGCCCTTCCTCTCCTACTCCTCCTGGT
GGTCCCCGGGCTGCTATGCGTCGCCGCGCGGCCGCTGACCACAAGGAGTC
CCTCCGCAATGCCAGACCCAGCTCGACTCGCGCCGCCGGTGCTGGTGGCT
CCTCCGGCACGATGCTCAAGCTCTACACTGACGAGAGCCCCGGTCTGAGG
GTTGACCCCGTTGTTGTCCTGGTTCTCAGTCTGGGCTTCATTTTCTCCGT
CGTTGGTCTCCACG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005784Sec61 translocon complex
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SBH1KYF_002015Aspergillus niger KYF3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_002015-T1KYF_002015-T1-proteinAspergillus niger KYF3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_002015-T1.cdsKYF_002015-T1.cdsAspergillus niger KYF3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_002015-T1.exon2KYF_002015-T1.exon2Aspergillus niger KYF3exon
KYF_002015-T1.exon1KYF_002015-T1.exon1Aspergillus niger KYF3exon


Properties
Property NameValue
DBxrefInterPro:IPR016482
DBxrefInterPro:IPR030671
DBxrefPFAM:PF03911
ProductArf guanine nucleotide exchange factor sbh1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:2168640..2169057 -
Powered by Drupal