You are here

Home

KYF_003488-T1, KYF_003488-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_003488-T1
Unique NameKYF_003488-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:1581560..1582306-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_003488-T1 ID=KYF_003488-T1|Name=KYF_003488-T1|organism=Aspergillus niger KYF3|type=mRNA|length=747bp|location=Sequence derived from alignment at ch3:1581560..1582306- (Aspergillus niger KYF3)
ATGAGCACCCTCGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGC
CTACTATCTGGGCAAGGTGAGCTTCATCTCTACGACTAGCGGACCATGAC
AATACTAATTCATTAATCCTCTCCAGAACAAGCGTCGCAAGTTCAGCCAT
GATGAGGGCGAGAAACCCGAAGATCCCACCGACAACCTCAAGGATGCCAC
CACTCTCTACGTTGGCAATCTGTATGTTACAGAGTATCTCCGTTGTCAAG
TCCTTGCTAACAACACAAGTTCTTTTTACACCACCGAAGAGCAGATCCAT
GAGCTATTTGCCAAGTGAGCGGAAACCACCACCGAATGCGTTATCGACGA
GTACCGAGCTGATGGAGTACAGGTGCGGCGAGATTAAGCGGCTAGTCATG
GGCCTTGACCGGTACAACAAGACCCCCTGCGGATTTTGCTTCGTCGAATA
TTACACCCATCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAA
AGCTGGACGAGAGAATCATCCGGACGGATCTGGATCCTGGCTTCGAGGAG
GGTCGGCAATACGGGTATGTATATGATCGGGATTCTCGAACGCGCAGGCT
GCTGACGTTGGTAGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTA
CCGGGAGGAATACGACCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGG
ATGACCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGGTAAGTAA
back to top

Coding sequence (CDS) from alignment at ch3:1581560..1582306-

>KYF_003488-T1 ID=KYF_003488-T1|Name=KYF_003488-T1|organism=Aspergillus niger KYF3|type=CDS|length=2655bp|location=Sequence derived from alignment at ch3:1581560..1582306- (Aspergillus niger KYF3)
ACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACG
ACCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGA
CGGGAGGAGGAGGAGTATGGTAAGGGTAAGTAAGTGCGGCGAGATTAAGC
GGCTAGTCATGGGCCTTGACCGGTACAACAAGACCCCCTGCGGATTTTGC
TTCGTCGAATATTACACCCATCAGGATGCGCTGGACTGTCTGAAATACAT
TGGTGGCACAAAGCTGGACGAGAGAATCATCCGGACGGATCTGGATCCTG
GCTTCGAGGAGGGTCGGCAATACGGTTCTTTTTACACCACCGAAGAGCAG
ATCCATGAGCTATTTGCCAAAACAAGCGTCGCAAGTTCAGCCATGATGAG
GGCGAGAAACCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCT
CTACGTTGGCAATCTATGAGCACCCTCGTCCACAACACCGTCGAACGCCT
GGACCGGCCGAGTGCCTACTATCTGGGCAAGACGTGGTAAATCGGGTGGT
CAGGTCCGCGATGAGTACCGGGAGGAATACGACCCTGGTCGCGGTGGCTA
TGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAGGAGGAGTATG
GTAAGGGTAAGTAAGTGCGGCGAGATTAAGCGGCTAGTCATGGGCCTTGA
CCGGTACAACAAGACCCCCTGCGGATTTTGCTTCGTCGAATATTACACCC
ATCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGAC
GAGAGAATCATCCGGACGGATCTGGATCCTGGCTTCGAGGAGGGTCGGCA
ATACGGTTCTTTTTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCA
AAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAACCCGAAGATC
CCACCGACAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTATGA
GCACCCTCGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTAC
TATCTGGGCAAGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACC
GGGAGGAATACGACCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGAT
GACCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGGTAAGTAAGTGCG
GCGAGATTAAGCGGCTAGTCATGGGCCTTGACCGGTACAACAAGACCCCC
TGCGGATTTTGCTTCGTCGAATATTACACCCATCAGGATGCGCTGGACTG
TCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGGACGG
ATCTGGATCCTGGCTTCGAGGAGGGTCGGCAATACGGTTCTTTTTACACC
ACCGAAGAGCAGATCCATGAGCTATTTGCCAAAACAAGCGTCGCAAGTTC
AGCCATGATGAGGGCGAGAAACCCGAAGATCCCACCGACAACCTCAAGGA
TGCCACCACTCTCTACGTTGGCAATCTATGAGCACCCTCGTCCACAACAC
CGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGACGTGGT
AAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACGACCCTGG
TCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGG
AGGAGGAGTATGGTAAGGGTAAGTAAGTGCGGCGAGATTAAGCGGCTAGT
CATGGGCCTTGACCGGTACAACAAGACCCCCTGCGGATTTTGCTTCGTCG
AATATTACACCCATCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGC
ACAAAGCTGGACGAGAGAATCATCCGGACGGATCTGGATCCTGGCTTCGA
GGAGGGTCGGCAATACGGTTCTTTTTACACCACCGAAGAGCAGATCCATG
AGCTATTTGCCAAAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGA
AACCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTACGTT
GGCAATCTATGAGCACCCTCGTCCACAACACCGTCGAACGCCTGGACCGG
CCGAGTGCCTACTATCTGGGCAAGACGTGGTAAATCGGGTGGTCAGGTCC
GCGATGAGTACCGGGAGGAATACGACCCTGGTCGCGGTGGCTATGGACGT
GCCTATGCGGATGACCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGG
TAAGTAAGTGCGGCGAGATTAAGCGGCTAGTCATGGGCCTTGACCGGTAC
AACAAGACCCCCTGCGGATTTTGCTTCGTCGAATATTACACCCATCAGGA
TGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAA
TCATCCGGACGGATCTGGATCCTGGCTTCGAGGAGGGTCGGCAATACGGT
TCTTTTTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCAAAACAAG
CGTCGCAAGTTCAGCCATGATGAGGGCGAGAAACCCGAAGATCCCACCGA
CAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTATGAGCACCCT
CGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGG
GCAAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBP20KYF_003488Aspergillus niger KYF3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_003488-T1KYF_003488-T1-proteinAspergillus niger KYF3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_003488-T1.cdsKYF_003488-T1.cdsAspergillus niger KYF3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_003488-T1.exon5KYF_003488-T1.exon5Aspergillus niger KYF3exon
KYF_003488-T1.exon4KYF_003488-T1.exon4Aspergillus niger KYF3exon
KYF_003488-T1.exon3KYF_003488-T1.exon3Aspergillus niger KYF3exon
KYF_003488-T1.exon2KYF_003488-T1.exon2Aspergillus niger KYF3exon
KYF_003488-T1.exon1KYF_003488-T1.exon1Aspergillus niger KYF3exon


Properties
Property NameValue
NoteBUSCO:EOG09264G04
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034148
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00076
ProductNuclear cap-binding protein subunit 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:1581560..1582306 -
Powered by Drupal