You are here

Home

KYF_004851-T1, KYF_004851-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_004851-T1
Unique NameKYF_004851-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:1759697..1760843-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_004851-T1 ID=KYF_004851-T1|Name=KYF_004851-T1|organism=Aspergillus niger KYF3|type=mRNA|length=1147bp|location=Sequence derived from alignment at ch4:1759697..1760843- (Aspergillus niger KYF3)
ATGTCTGCGAGAGGGTGAGTTGTTTCTTTTCGTTGTTGGAGACGTGTGGG
AAAGCGAGACAGAGAAAGAGAGGAAGAAATCCGGACCGGAGATATTGAAA
TGCTGCGGGAAAGAGATGAGATGAGAAGGGATGGAATGGAATATTCGCTG
GCTGGAGATTTCGACTCGAAATTACGGTTGGATTGAGTTCGATATGCGAC
ATACGAGATTGAAAGAGGAGGGTTGAATGAAGGTCCGGGAAAGAGATGGA
TAAATCTATGTGGATGGGAATTTGATATACATGGGATACGAGGGAATTAA
AGCTAACAAAATATCTATAACAGACGCGGTGGTGCCTCCGGCAACAAGCT
CAAGATGACCCTCGGTCTGCCTTGGTATGTCAACTCCAAATTTCTTCCGT
TCAAATCCATACACCCATCTTCGAGAGAATTATGCGATTCGATACAATTA
AATCAAATCAAATCGATCTCAATTATTCTTCAATCGAAACATACACCCAC
CACACACAAGCCACCTCGATATCTTCCCACCCAACACCCATGATTTCACA
ACCTACAACCGACACGAACACATGAAGAAAAAAATGATGAACACAGCTAA
TTAATCTTTTTGCCTACAGCGGCGCCGTGCTCAACTGCTGCGACAACTCC
GGTGCCCGCAACCTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCT
GAACCGTCTCCCCGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCA
AGAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTC
CGTCAGAGCAAGCCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGA
GGACAACGCTGGTGTTGTACGTACCCTTGTCCCCGAATTCCAATTCCACT
CTTTATATCAAGTGGATGAGGGTCATATGCGACAATAATGATGGAAATAC
TAATGATCGGTATAGATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGC
TATCACTGGTCCCGTTGGTAAGGAGGCTGCTGAGCTTTGGCCTGTAAGTT
CTCCCTAGCATACCTCAACGGGTATATATCAATGGGGAGATTCATATGCT
AATTGTGTGTCCAGCGTATTGCCTCCAACTCCGGTGTTGTCATGTAA
back to top

Coding sequence (CDS) from alignment at ch4:1759697..1760843-

>KYF_004851-T1 ID=KYF_004851-T1|Name=KYF_004851-T1|organism=Aspergillus niger KYF3|type=CDS|length=2115bp|location=Sequence derived from alignment at ch4:1759697..1760843- (Aspergillus niger KYF3)
CGTATTGCCTCCAACTCCGGTGTTGTCATGTAAATCGTCAACGCCAAGGG
TGAGATGAAGGGTTCCGCTATCACTGGTCCCGTTGGTAAGGAGGCTGCTG
AGCTTTGGCCTCGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCCG
CAACCTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGTC
TCCCCGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGGA
AAGCCTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGAG
CAAGCCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGAGGACAACG
CTGGTGTTACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATGACCCTCGG
TCTGCCTTGATGTCTGCGAGAGGCGTATTGCCTCCAACTCCGGTGTTGTC
ATGTAAATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACTGG
TCCCGTTGGTAAGGAGGCTGCTGAGCTTTGGCCTCGGCGCCGTGCTCAAC
TGCTGCGACAACTCCGGTGCCCGCAACCTGTACATCATCTCCGTCAAGGG
TATCGGTGCTCGCCTGAACCGTCTCCCCGCTGCCGGTGTCGGTGACATGG
TCATGGCCACCGTCAAGAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATG
CCCGCTGTTGTTGTCCGTCAGAGCAAGCCCTGGAGACGCCCCGACGGTAT
CTACCTCTACTTCGAGGACAACGCTGGTGTTACGCGGTGGTGCCTCCGGC
AACAAGCTCAAGATGACCCTCGGTCTGCCTTGATGTCTGCGAGAGGCGTA
TTGCCTCCAACTCCGGTGTTGTCATGTAAATCGTCAACGCCAAGGGTGAG
ATGAAGGGTTCCGCTATCACTGGTCCCGTTGGTAAGGAGGCTGCTGAGCT
TTGGCCTCGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCCGCAAC
CTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGTCTCCC
CGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGGAAAGC
CTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGAGCAAG
CCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGAGGACAACGCTGG
TGTTACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATGACCCTCGGTCTG
CCTTGATGTCTGCGAGAGGCGTATTGCCTCCAACTCCGGTGTTGTCATGT
AAATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACTGGTCCC
GTTGGTAAGGAGGCTGCTGAGCTTTGGCCTCGGCGCCGTGCTCAACTGCT
GCGACAACTCCGGTGCCCGCAACCTGTACATCATCTCCGTCAAGGGTATC
GGTGCTCGCCTGAACCGTCTCCCCGCTGCCGGTGTCGGTGACATGGTCAT
GGCCACCGTCAAGAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATGCCCG
CTGTTGTTGTCCGTCAGAGCAAGCCCTGGAGACGCCCCGACGGTATCTAC
CTCTACTTCGAGGACAACGCTGGTGTTACGCGGTGGTGCCTCCGGCAACA
AGCTCAAGATGACCCTCGGTCTGCCTTGATGTCTGCGAGAGGCGTATTGC
CTCCAACTCCGGTGTTGTCATGTAAATCGTCAACGCCAAGGGTGAGATGA
AGGGTTCCGCTATCACTGGTCCCGTTGGTAAGGAGGCTGCTGAGCTTTGG
CCTCGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCCGCAACCTGT
ACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGTCTCCCCGCT
GCCGGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCCTGA
GCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGAGCAAGCCCT
GGAGACGCCCCGACGGTATCTACCTCTACTTCGAGGACAACGCTGGTGTT
ACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATGACCCTCGGTCTGCCTT
GATGTCTGCGAGAGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL23KYF_004851Aspergillus niger KYF3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_004851-T1KYF_004851-T1-proteinAspergillus niger KYF3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_004851-T1.cdsKYF_004851-T1.cdsAspergillus niger KYF3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_004851-T1.exon5KYF_004851-T1.exon5Aspergillus niger KYF3exon
KYF_004851-T1.exon4KYF_004851-T1.exon4Aspergillus niger KYF3exon
KYF_004851-T1.exon3KYF_004851-T1.exon3Aspergillus niger KYF3exon
KYF_004851-T1.exon2KYF_004851-T1.exon2Aspergillus niger KYF3exon
KYF_004851-T1.exon1KYF_004851-T1.exon1Aspergillus niger KYF3exon


Properties
Property NameValue
NoteBUSCO:EOG09265CQO
DBxrefInterPro:IPR019972
DBxrefInterPro:IPR036853
DBxrefInterPro:IPR000218
DBxrefPFAM:PF00238
Product60S ribosomal protein L23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:1759697..1760843 -
Powered by Drupal