You are here

Home

KYF_007031-T1, KYF_007031-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_007031-T1
Unique NameKYF_007031-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2522571..2523830-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_007031-T1 ID=KYF_007031-T1|Name=KYF_007031-T1|organism=Aspergillus niger KYF3|type=mRNA|length=1260bp|location=Sequence derived from alignment at ch5:2522571..2523830- (Aspergillus niger KYF3)
ATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGTCGGTCCC
TGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGTAAATTGGT
GCCCATGATCATTATCTACCCACATCGATGCGCTTAGGAAACTGACATGC
CGTTTGATCTGCCTGCAGGAGGAAATTACAGCCATCATCAAGAAACGGTC
CGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCTGCCTGTTGACTTCG
TCCGATATGCGCAATACGAGATGAACCTAGACACCCTGCGCCGGAAGAGG
GTGAAGCGGTTGGGAATCAGATCGGCAGGATACACTGGGCAAAGGCGCAT
CTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCATGGTGATGTGGGCT
TGTGGGTGCAGTACCTCGAATACGCGAAACAACAGAAAGCCTACAAAAAG
GTCTCGACCATCCTTACGGACGCCTTGCGGTTACATCCCGCCAACGTCGA
CTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGAGCATGCGGATATGA
CACAATCTAGGGGTTACATGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCC
AAGAAGCTGTGGCTCCACTATGCCAAACTGGAATTGATATATATCGCCAA
GCTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAAGCCGATCGAAGCCC
CGAAGCCAGCGCAGGAGGACGATTTAGATGCCGACATGATTGCTATGCCC
AAGATCACTGGAGAAGATATCAACCCCGGCGCTGGAGAGGATGGCGGTGT
GGATCAAGTGGCTTTGGACAACCTTGCCAACACCCCAGCCCTGAGTGGTG
CTATCCCTCTCGCCATCTTCGATACGGCCATGAAGAACTTCGAAAATGAC
GACCGTTTCGGTCATGAGTTCTACGATATGGCGGTCGAGTTCGACGACCT
GCCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGACGTGATGCAGCAGA
CCAAGCCAAACAGTCCTCATACGCAAATTTGCTACATCAAATTCCCCACC
GCTGGACTCCGGGTTACTTCACCCGAATTCCCACGTGCGTTTAGTGCGTC
ATTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAACGTCGCCAAGGAGA
TCGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAGGCGTGGATGCCTCC
CTCCAAAAGGCGATTTCGGCCACTATCCGTAATGCGGAACGCACTGTACA
GGAAGCATAG
back to top

Coding sequence (CDS) from alignment at ch5:2522571..2523830-

>KYF_007031-T1 ID=KYF_007031-T1|Name=KYF_007031-T1|organism=Aspergillus niger KYF3|type=CDS|length=2364bp|location=Sequence derived from alignment at ch5:2522571..2523830- (Aspergillus niger KYF3)
GAGGAAATTACAGCCATCATCAAGAAACGGTCCGATTTTGAGCACAAGCT
GAATGCACGTGGCGCCCTGCCTGTTGACTTCGTCCGATATGCGCAATACG
AGATGAACCTAGACACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATC
AGATCGGCAGGATACACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCG
CGCAACTCGCAAGTTTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCG
AATACGCGAAACAACAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACG
GACGCCTTGCGGTTACATCCCGCCAACGTCGACTTGTGGCTATATGCTGC
GCAGTACTCTGTGGATGAGCATGCGGATATGACACAATCTAGGGGTTACA
TGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCCAAGAAGCTGTGGCTCCAC
TATGCCAAACTGGAATTGATATATATCGCCAAGCTGGTTGCTCGACAGCG
GATCTTGGGTCTCGATAAGCCGATCGAAGCCCCGAAGCCAGCGCAGGAGG
ACGATTTAGATGCCGACATGATTGCTATGCCCAAGATCACTGGAGAAGAT
ATCAACCCCGGCGCTGGAGAGGATGGCGGTGTGGATCAAGTGGCTTTGGA
CAACCTTGCCAACACCCCAGCCCTGAGTGGTGCTATCCCTCTCGCCATCT
TCGATACGGCCATGAAGAACTTCGAAAATGACGACCGTTTCGGTCATGAG
TTCTACGATATGGCGGTCGAGTTCGACGACCTGCCCTGTCTGCACAAAAT
TCTCGGCCATGTGGTCGACGTGATGCAGCAGACCAAGCCAAACAGTCCTC
ATACGCAAATTTGCTACATCAAATTCCCCACCGCTGGACTCCGGGTTACT
TCACCCGAATTCCCACGTGCGTTTAGTGCGTCATTTGCCCGTCTCAAGGA
GTACCGGAATAACCCCAACGTCGCCAAGGAGATCGTCAGCTGGCTACAGC
CCCTTGAGAAGACAGAAGGCGTGGATGCCTCCCTCCAAAAGGCGATTTCG
GCCACTATCCGTAATGCGGAACGCACTGTACAGGAAGCATAGATGTCAGC
CGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGTCGGTCCCTGAGCTCA
AGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGAGGAAATTACAGCCATC
ATCAAGAAACGGTCCGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCT
GCCTGTTGACTTCGTCCGATATGCGCAATACGAGATGAACCTAGACACCC
TGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCAGATCGGCAGGATACACT
GGGCAAAGGCGCATCTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCA
TGGTGATGTGGGCTTGTGGGTGCAGTACCTCGAATACGCGAAACAACAGA
AAGCCTACAAAAAGGTCTCGACCATCCTTACGGACGCCTTGCGGTTACAT
CCCGCCAACGTCGACTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGA
GCATGCGGATATGACACAATCTAGGGGTTACATGCAGCGCGGTTTGCGCT
TCTGCAAAAGCTCCAAGAAGCTGTGGCTCCACTATGCCAAACTGGAATTG
ATATATATCGCCAAGCTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAA
GCCGATCGAAGCCCCGAAGCCAGCGCAGGAGGACGATTTAGATGCCGACA
TGATTGCTATGCCCAAGATCACTGGAGAAGATATCAACCCCGGCGCTGGA
GAGGATGGCGGTGTGGATCAAGTGGCTTTGGACAACCTTGCCAACACCCC
AGCCCTGAGTGGTGCTATCCCTCTCGCCATCTTCGATACGGCCATGAAGA
ACTTCGAAAATGACGACCGTTTCGGTCATGAGTTCTACGATATGGCGGTC
GAGTTCGACGACCTGCCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGA
CGTGATGCAGCAGACCAAGCCAAACAGTCCTCATACGCAAATTTGCTACA
TCAAATTCCCCACCGCTGGACTCCGGGTTACTTCACCCGAATTCCCACGT
GCGTTTAGTGCGTCATTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAA
CGTCGCCAAGGAGATCGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAG
GCGTGGATGCCTCCCTCCAAAAGGCGATTTCGGCCACTATCCGTAATGCG
GAACGCACTGTACAGGAAGCATAGATGTCAGCCGCTACCGATAAGGCACG
CTTCTTTCTGGAGAAGTCGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGA
AAATCTTCTCCAAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0030515snoRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006396RNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KYF_007031KYF_007031Aspergillus niger KYF3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_007031-T1KYF_007031-T1-proteinAspergillus niger KYF3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_007031-T1.cdsKYF_007031-T1.cdsAspergillus niger KYF3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_007031-T1.exon2KYF_007031-T1.exon2Aspergillus niger KYF3exon
KYF_007031-T1.exon1KYF_007031-T1.exon1Aspergillus niger KYF3exon


Properties
Property NameValue
DBxrefInterPro:IPR011990
DBxrefInterPro:IPR013949
DBxrefInterPro:IPR003107
DBxrefPFAM:PF08640
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2522571..2523830 -
Powered by Drupal