You are here

Home

KYF_008619-T1, KYF_008619-T1 (mRNA) Aspergillus niger KYF3

Overview
NameKYF_008619-T1
Unique NameKYF_008619-T1
TypemRNA
OrganismAspergillus niger KYF3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:4392594..4393328+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KYF_008619-T1 ID=KYF_008619-T1|Name=KYF_008619-T1|organism=Aspergillus niger KYF3|type=mRNA|length=735bp|location=Sequence derived from alignment at ch6:4392594..4393328+ (Aspergillus niger KYF3)
ATGCGTCAACTCACCGAAGGTAGGTACAACCATCTCCGTCTGTTGTGATT
CTCGCGCATGGATTCTTATTTCGCTTCTGTTTAGAGGAAACCCGGACTTT
GTTCGAAAAGTTGGCCAACTACACTGGAAGGAGTCTTAACAACCTGATCG
CACCTCCTTCTGGCTCCGAAGATGCCAACGACCGCTATGTTTTCCGTCTT
CACGGCAGCAGAGTATACTACCTGAGACTTTCTCTGGCGAACCTCGCAAC
CAGCATTCCTCGCGCCAACCTCCTCACCCTCGGAACCTGCATCGGAAAGT
TCACCAAGACCGGAAAGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTC
GCTCCTCATGCGCGCTACAAGGTGTGGATCAAGCAGAACGGTGTGATGCC
GTTCCTCTATGGCTCCAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCG
AGGACTGCCCGGAGAATGCCGGTGTAATCGTTATGGATATGAATGATACG
CCATTGGTAAGAAGACTTCGGCTGGATTGAGATAATCAGAGGCTGATATA
CGTTAGGGATTCGGTGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACT
GGAGCCCACAGCCAACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACC
TGAGAGAGGTAGGTTGACCAAATGTCACATCCACGGTATCAATTTGCTGA
CATACCCCTAGGAAGATACTCTGTTTACGACCTAA
back to top

Coding sequence (CDS) from alignment at ch6:4392594..4393328+

>KYF_008619-T1 ID=KYF_008619-T1|Name=KYF_008619-T1|organism=Aspergillus niger KYF3|type=CDS|length=2268bp|location=Sequence derived from alignment at ch6:4392594..4393328+ (Aspergillus niger KYF3)
ATGCGTCAACTCACCGAAGAGGAAACCCGGACTTTGTTCGAAAAGTTGGC
CAACTACACTGGAAGGAGTCTTAACAACCTGATCGCACCTCCTTCTGGCT
CCGAAGATGCCAACGACCGCTATGTTTTCCGTCTTCACGGCAGCAGAGTA
TACTACCTGAGACTTTCTCTGGCGAACCTCGCAACCAGCATTCCTCGCGC
CAACCTCCTCACCCTCGGAACCTGCATCGGAAAGTTCACCAAGACCGGAA
AGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTCGCTCCTCATGCGCGC
TACAAGGTGTGGATCAAGCAGAACGGTGTGATGCCGTTCCTCTATGGCTC
CAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCGAGGACTGCCCGGAGA
ATGCCGGTGTAATCGTTATGGATATGAATGATACGCCATTGGGATTCGGT
GTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACTGGAGCCCACAGCCAA
CGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACCTGAGAGAGGAAGATA
CTCTGTTTACGACCTAAATGCGTCAACTCACCGAAGAGGAAACCCGGACT
TTGTTCGAAAAGTTGGCCAACTACACTGGAAGGAGTCTTAACAACCTGAT
CGCACCTCCTTCTGGCTCCGAAGATGCCAACGACCGCTATGTTTTCCGTC
TTCACGGCAGCAGAGTATACTACCTGAGACTTTCTCTGGCGAACCTCGCA
ACCAGCATTCCTCGCGCCAACCTCCTCACCCTCGGAACCTGCATCGGAAA
GTTCACCAAGACCGGAAAGTTCAGAATCCAGCTTACGGCTTTGGATGTCC
TCGCTCCTCATGCGCGCTACAAGGTGTGGATCAAGCAGAACGGTGTGATG
CCGTTCCTCTATGGCTCCAACGTGGCCAAGGCCCACGTCGGAAGATTCAG
CGAGGACTGCCCGGAGAATGCCGGTGTAATCGTTATGGATATGAATGATA
CGCCATTGGGATTCGGTGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGA
CTGGAGCCCACAGCCAACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTA
CCTGAGAGAGGAAGATACTCTGTTTACGACCTAAATGCGTCAACTCACCG
AAGAGGAAACCCGGACTTTGTTCGAAAAGTTGGCCAACTACACTGGAAGG
AGTCTTAACAACCTGATCGCACCTCCTTCTGGCTCCGAAGATGCCAACGA
CCGCTATGTTTTCCGTCTTCACGGCAGCAGAGTATACTACCTGAGACTTT
CTCTGGCGAACCTCGCAACCAGCATTCCTCGCGCCAACCTCCTCACCCTC
GGAACCTGCATCGGAAAGTTCACCAAGACCGGAAAGTTCAGAATCCAGCT
TACGGCTTTGGATGTCCTCGCTCCTCATGCGCGCTACAAGGTGTGGATCA
AGCAGAACGGTGTGATGCCGTTCCTCTATGGCTCCAACGTGGCCAAGGCC
CACGTCGGAAGATTCAGCGAGGACTGCCCGGAGAATGCCGGTGTAATCGT
TATGGATATGAATGATACGCCATTGGGATTCGGTGTGACTGCCCGGTCGA
GTGCTGAAACCCGGAGACTGGAGCCCACAGCCAACGTGGTGTTCCGTCAG
GCAGATATTGGAGAGTACCTGAGAGAGGAAGATACTCTGTTTACGACCTA
AATGCGTCAACTCACCGAAGAGGAAACCCGGACTTTGTTCGAAAAGTTGG
CCAACTACACTGGAAGGAGTCTTAACAACCTGATCGCACCTCCTTCTGGC
TCCGAAGATGCCAACGACCGCTATGTTTTCCGTCTTCACGGCAGCAGAGT
ATACTACCTGAGACTTTCTCTGGCGAACCTCGCAACCAGCATTCCTCGCG
CCAACCTCCTCACCCTCGGAACCTGCATCGGAAAGTTCACCAAGACCGGA
AAGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTCGCTCCTCATGCGCG
CTACAAGGTGTGGATCAAGCAGAACGGTGTGATGCCGTTCCTCTATGGCT
CCAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCGAGGACTGCCCGGAG
AATGCCGGTGTAATCGTTATGGATATGAATGATACGCCATTGGGATTCGG
TGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACTGGAGCCCACAGCCA
ACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACCTGAGAGAGGAAGAT
ACTCTGTTTACGACCTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NIP7KYF_008619Aspergillus niger KYF3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_008619-T1.exon1KYF_008619-T1.exon1Aspergillus niger KYF3exon
KYF_008619-T1.exon2KYF_008619-T1.exon2Aspergillus niger KYF3exon
KYF_008619-T1.exon3KYF_008619-T1.exon3Aspergillus niger KYF3exon
KYF_008619-T1.exon4KYF_008619-T1.exon4Aspergillus niger KYF3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KYF_008619-T1.cdsKYF_008619-T1.cdsAspergillus niger KYF3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KYF_008619-T1KYF_008619-T1-proteinAspergillus niger KYF3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264PD5
DBxrefInterPro:IPR015947
DBxrefInterPro:IPR040598
DBxrefInterPro:IPR016686
DBxrefInterPro:IPR005155
DBxrefInterPro:IPR036974
DBxrefInterPro:IPR002478
DBxrefPFAM:PF17833
DBxrefPFAM:PF03657
Productribosome biosynthesis protein nip7
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KYF32020-10-09
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:4392594..4393328 +
Powered by Drupal