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ATCC64974_103280-T1, ATCC64974_103280-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_103280-T1
Unique NameATCC64974_103280-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:2374411..2375278-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_103280-T1 ID=ATCC64974_103280-T1|Name=ATCC64974_103280-T1|organism=Aspergillus niger N402|type=mRNA|length=868bp|location=Sequence derived from alignment at OGUI01000017.1:2374411..2375278- (Aspergillus niger N402)
ATGTCTAAGATCACAGTCGGTACGTTGCCTCTTTTCCCCAACAATGGAAA
CAATAGGTGTATGTGTATGAAAGAGAGATGCTAATTAATGAACAGCCGGA
GTGCGCCAGAACATCGAGCAGCTGCTCAACTACTCTCAGAATGAGAAGAA
GAGAAACTTCCTCGAGACCGTCGAGCTTCAGATCGGTCTGAAGAACTACG
ACCCCCAGCGTGACAAGCGTTTCTCTGGCACCATCAAGCTGCCTACCGTT
CCCCGTCCCAACATGACCATCTGGTATGATACCACCCCCACCGGAATCCT
CCCACGGAATAAAGAGAGACAAGGGAACAGAAGTACTAATAAGAGGATAG
TGTTCTTGGTGACCAGCACGATCTCGACCGTGCCAAGCACCACGGCATTG
ACGCCATGTCCGCCGATGACCTGAAGAAGCTGAACAAGAACAAGAAGCTC
ATCAAGAAGCTTGCTCGCAAGTACGATGCTTTCCTTGCTTCCGACACCCT
CATCAAGCAGATCCCCCGTCTCTTGGGTCCTGGTCTTTCCAAGGGTAAGC
ACCACATTCCCCATAATATCCCCCAGTCGTGATGAAATACTAAATACTCG
ATTAGCCGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCA
ACAAGGTCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTT
CTCTGCCTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCT
CGTCGCCAACACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGA
AGGGTTGGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCC
CCTAAGCGTCTGTACTAA
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Coding sequence (CDS) from alignment at OGUI01000017.1:2374411..2375278-

>ATCC64974_103280-T1 ID=ATCC64974_103280-T1|Name=ATCC64974_103280-T1|organism=Aspergillus niger N402|type=CDS|length=2616bp|location=Sequence derived from alignment at OGUI01000017.1:2374411..2375278- (Aspergillus niger N402)
CCGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCAACAAG
GTCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTTCTCTG
CCTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCTCGTCG
CCAACACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGAAGGGT
TGGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCCCCTAA
GCGTCTGTACTAATGTTCTTGGTGACCAGCACGATCTCGACCGTGCCAAG
CACCACGGCATTGACGCCATGTCCGCCGATGACCTGAAGAAGCTGAACAA
GAACAAGAAGCTCATCAAGAAGCTTGCTCGCAAGTACGATGCTTTCCTTG
CTTCCGACACCCTCATCAAGCAGATCCCCCGTCTCTTGGGTCCTGGTCTT
TCCAAGGCCGGAGTGCGCCAGAACATCGAGCAGCTGCTCAACTACTCTCA
GAATGAGAAGAAGAGAAACTTCCTCGAGACCGTCGAGCTTCAGATCGGTC
TGAAGAACTACGACCCCCAGCGTGACAAGCGTTTCTCTGGCACCATCAAG
CTGCCTACCGTTCCCCGTCCCAACATGACCATCTGATGTCTAAGATCACA
GTCGCCGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCAA
CAAGGTCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTTC
TCTGCCTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCTC
GTCGCCAACACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGAA
GGGTTGGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCCC
CTAAGCGTCTGTACTAATGTTCTTGGTGACCAGCACGATCTCGACCGTGC
CAAGCACCACGGCATTGACGCCATGTCCGCCGATGACCTGAAGAAGCTGA
ACAAGAACAAGAAGCTCATCAAGAAGCTTGCTCGCAAGTACGATGCTTTC
CTTGCTTCCGACACCCTCATCAAGCAGATCCCCCGTCTCTTGGGTCCTGG
TCTTTCCAAGGCCGGAGTGCGCCAGAACATCGAGCAGCTGCTCAACTACT
CTCAGAATGAGAAGAAGAGAAACTTCCTCGAGACCGTCGAGCTTCAGATC
GGTCTGAAGAACTACGACCCCCAGCGTGACAAGCGTTTCTCTGGCACCAT
CAAGCTGCCTACCGTTCCCCGTCCCAACATGACCATCTGATGTCTAAGAT
CACAGTCGCCGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGG
CCAACAAGGTCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAG
GTTCTCTGCCTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGA
GCTCGTCGCCAACACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTA
AGAAGGGTTGGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCT
CCCCCTAAGCGTCTGTACTAATGTTCTTGGTGACCAGCACGATCTCGACC
GTGCCAAGCACCACGGCATTGACGCCATGTCCGCCGATGACCTGAAGAAG
CTGAACAAGAACAAGAAGCTCATCAAGAAGCTTGCTCGCAAGTACGATGC
TTTCCTTGCTTCCGACACCCTCATCAAGCAGATCCCCCGTCTCTTGGGTC
CTGGTCTTTCCAAGGCCGGAGTGCGCCAGAACATCGAGCAGCTGCTCAAC
TACTCTCAGAATGAGAAGAAGAGAAACTTCCTCGAGACCGTCGAGCTTCA
GATCGGTCTGAAGAACTACGACCCCCAGCGTGACAAGCGTTTCTCTGGCA
CCATCAAGCTGCCTACCGTTCCCCGTCCCAACATGACCATCTGATGTCTA
AGATCACAGTCGCCGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGAC
ATGGCCAACAAGGTCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAA
GAAGGTTCTCTGCCTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGG
ACGAGCTCGTCGCCAACACCATGCTGGCCATCAACTACCTTGTCTCTCTG
CTTAAGAAGGGTTGGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCAT
GTCTCCCCCTAAGCGTCTGTACTAATGTTCTTGGTGACCAGCACGATCTC
GACCGTGCCAAGCACCACGGCATTGACGCCATGTCCGCCGATGACCTGAA
GAAGCTGAACAAGAACAAGAAGCTCATCAAGAAGCTTGCTCGCAAGTACG
ATGCTTTCCTTGCTTCCGACACCCTCATCAAGCAGATCCCCCGTCTCTTG
GGTCCTGGTCTTTCCAAGGCCGGAGTGCGCCAGAACATCGAGCAGCTGCT
CAACTACTCTCAGAATGAGAAGAAGAGAAACTTCCTCGAGACCGTCGAGC
TTCAGATCGGTCTGAAGAACTACGACCCCCAGCGTGACAAGCGTTTCTCT
GGCACCATCAAGCTGCCTACCGTTCCCCGTCCCAACATGACCATCTGATG
TCTAAGATCACAGTCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CRP74ATCC64974_103280Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103280-T1ATCC64974_103280-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103280-T1.cdsATCC64974_103280-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_103280-T1.exon4ATCC64974_103280-T1.exon4Aspergillus niger N402exon
ATCC64974_103280-T1.exon3ATCC64974_103280-T1.exon3Aspergillus niger N402exon
ATCC64974_103280-T1.exon2ATCC64974_103280-T1.exon2Aspergillus niger N402exon
ATCC64974_103280-T1.exon1ATCC64974_103280-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteEggNog:ENOG41
NoteBUSCO:EOG09264LBC
DBxrefInterPro:IPR023674
DBxrefInterPro:IPR023673
DBxrefInterPro:IPR028364
DBxrefInterPro:IPR002143
DBxrefInterPro:IPR016095
DBxrefPFAM:PF00687
Product60S ribosomal protein L10a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:2374411..2375278 -
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