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ATCC64974_105600-T1, ATCC64974_105600-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_105600-T1
Unique NameATCC64974_105600-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:3109213..3110029-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_105600-T1 ID=ATCC64974_105600-T1|Name=ATCC64974_105600-T1|organism=Aspergillus niger N402|type=mRNA|length=817bp|location=Sequence derived from alignment at OGUI01000017.1:3109213..3110029- (Aspergillus niger N402)
ATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAG
AGCCCCCGTACGCATCCCCTCATCCCTTATCGCATCCTCGCAGGTTGACC
TGTCTGCTGACTTGTACTCGCTAGGACCTCCCAGCCAAGGTGCGCACTAT
TGCTCCATCCCTCTTGATCCTCCTCTCTGTCTTTCAATCCCCCGTTCTCG
ATTGACCCGCGCACAGTTCCGGAAACTCCTGACGCCAGGCAAGATCGGCC
AGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAATTCCTC
CGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGATGTCGA
TTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTCTCCGCA
TCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCCGATGCC
CTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATGGGGTGG
AACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTATCAACC
CGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAAGGGGAA
GAGCCGACACCTAGTTTCTGTTTGATGGATGTAAGTCGCGCAACTCCACG
GGGTTCGCTGCAAGACTCGGTACGTGCTCTATGCTAACACAGGATTATAG
ATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGC
CGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACA
ATATCCCTTCTTCATGA
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Coding sequence (CDS) from alignment at OGUI01000017.1:3109213..3110029-

>ATCC64974_105600-T1 ID=ATCC64974_105600-T1|Name=ATCC64974_105600-T1|organism=Aspergillus niger N402|type=CDS|length=2412bp|location=Sequence derived from alignment at OGUI01000017.1:3109213..3110029- (Aspergillus niger N402)
ATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGC
CGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACA
ATATCCCTTCTTCATGATTCCGGAAACTCCTGACGCCAGGCAAGATCGGC
CAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAATTCCT
CCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGATGTCG
ATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTCTCCGC
ATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCCGATGC
CCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATGGGGTG
GAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTATCAAC
CCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAAGGGGA
AGAGCCGACACCTAGTTTCTGTTTGATGGATGACCTCCCAGCCAAGATGA
CTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAGAGCC
CCCATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGA
CGCCGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGA
ACAATATCCCTTCTTCATGATTCCGGAAACTCCTGACGCCAGGCAAGATC
GGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAATT
CCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGATG
TCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTCTC
CGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCCGA
TGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATGGG
GTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTATC
AACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAAGG
GGAAGAGCCGACACCTAGTTTCTGTTTGATGGATGACCTCCCAGCCAAGA
TGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAGA
GCCCCCATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGAC
GGACGCCGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCA
AGAACAATATCCCTTCTTCATGATTCCGGAAACTCCTGACGCCAGGCAAG
ATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGA
ATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCG
ATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGT
CTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGC
CGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTAT
GGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTT
ATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGA
AGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATGACCTCCCAGCCA
AGATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGAC
AGAGCCCCCATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAA
GACGGACGCCGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACC
GCAAGAACAATATCCCTTCTTCATGATTCCGGAAACTCCTGACGCCAGGC
AAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTT
CGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACT
TCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGG
AGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGA
CGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGC
TATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTC
TTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCC
GGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATGACCTCCCAG
CCAAGATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCC
GACAGAGCCCCC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030904retromer complex
Vocabulary: Biological Process
TermDefinition
GO:0042147retrograde transport, endosome to Golgi
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_105600ATCC64974_105600Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_105600-T1ATCC64974_105600-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_105600-T1.cdsATCC64974_105600-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_105600-T1.exon4ATCC64974_105600-T1.exon4Aspergillus niger N402exon
ATCC64974_105600-T1.exon3ATCC64974_105600-T1.exon3Aspergillus niger N402exon
ATCC64974_105600-T1.exon2ATCC64974_105600-T1.exon2Aspergillus niger N402exon
ATCC64974_105600-T1.exon1ATCC64974_105600-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG092640ZF
DBxrefInterPro:IPR028661
DBxrefInterPro:IPR024654
DBxrefInterPro:IPR000979
DBxrefInterPro:IPR029052
DBxrefPFAM:PF12850
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:3109213..3110029 -
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