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ATCC64974_108090-T1, ATCC64974_108090-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_108090-T1
Unique NameATCC64974_108090-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:3900011..3901847+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_108090-T1 ID=ATCC64974_108090-T1|Name=ATCC64974_108090-T1|organism=Aspergillus niger N402|type=mRNA|length=1837bp|location=Sequence derived from alignment at OGUI01000017.1:3900011..3901847+ (Aspergillus niger N402)
ATGTCGCTCCCCGGTCTTGATCTAACACAACCCTCCGCGGACCGCGAGTT
CGCGCCAGCCCCGCCCTCTCAGATTAGCCTTCCCAAAGGCTCAGAGTGGC
GGTTCGAAGTCGCCTTTGGCACGACCGTCCGCGTAAAGGTGAGCTGCCGT
GACCCCCTCAGCACATTACCCATCCCTCACGAATCACAAAAAAAAAAAAG
ACAGTTGACTGACATATCTACCACCTGGAGAGCTAGCTCTTAGCCGGAAC
CGCCGAACTCTTTGGCACCGAACTAGCCCCCTCGCAAACCTACACCTTCT
CCGGCACGAAAGCAGCAATCTACACCTGGCATGGATGCACACTAGAAGTA
AGCGCCGGAGAGGCCATCACAGGTCTGGACAGCCTCGCCCCGGGAGGCAC
AAATGGAACAACGGCGCGCGGACTCGGCGCGGGCGGCTGCCAGAGCGAGT
ACGTGGCGGAGGAAACACCGATGGTTGAATACGCGAACGTGCATTTTGCG
CTGGAGACACTACGACAGGAGGCCAAAGCGACAGGGAAAGATGGCCCGCG
GGTACTGATTCTCGGTCCTGAGGATGCGGGCAAGACAAGTCTGTCGAAGA
TCCTGACGGCGTATGCGACTAAGGTGGGCCGGCAGCCGCTGGTGGTTAAT
TTGGATCCTACGGAGGGCATGCTAAGTGTTCCGGGGACGTTGACGGCTAC
GGCGTTCCGGACGATGATTGATGTTGAGGAAGGATGGGGGAGTAGTCCCA
TGTCCGGGCCGAGTGCGGTGCCGGTGAAGTTGCCCTTGGTGTATTTCTAT
CCGATGCAGAACCCATTGGAGGCCGATGGCTCGGTGTATAAGGCTATTGT
GTCGAGGTTGGCGCTGTCGGTGACGGGGAGGATGGCGGAGGATGAGGATG
CAAGGGAGACGGGAATTATTGTGGATACGCCGGGAATATTGAGTCAGAGT
AAGGCTGGGAATGTCGAGATGATTAATCATATTGTGACGGAGTTTGCGAG
TGAGTTTTTACTTGATCCTGGTTGGAAGGGTGTATGCGCTGACGGGGTTA
TGGCACAGTTACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACAGCA
TCATGATGAAGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCAGCG
GCGTCGGATGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTG
TGTTGATCGCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCC
GGACATACTTCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCGCTG
TCGCTGTCTGCGTCGTCAACGACGAATGTTACTTTGTCGCCACATGCGCA
GCAGCTAGACTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGTCAG
CAGAGGAGGACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGCGAT
GCCTTCCTCCCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCCGCA
AGAAGAGGCTCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGGTGA
AGGAGACGGTGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTA
CTGCCTCCTGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATCACACA
TGCAAGCTCGACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCATGG
GCTTCTTGTATGTGGCTGACGTGGACGCGGAGAAGGGCAAGATCCGAGTG
CTGGCGCCGGTTGGAGGTCGCGTGCCACCGCGGGCGATTGTATGGGGGAA
GAAATGGCCTGGGGAGGTGGTGGGATTGGTGGGATAG
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Coding sequence (CDS) from alignment at OGUI01000017.1:3900011..3901847+

>ATCC64974_108090-T1 ID=ATCC64974_108090-T1|Name=ATCC64974_108090-T1|organism=Aspergillus niger N402|type=CDS|length=5040bp|location=Sequence derived from alignment at OGUI01000017.1:3900011..3901847+ (Aspergillus niger N402)
ATGTCGCTCCCCGGTCTTGATCTAACACAACCCTCCGCGGACCGCGAGTT
CGCGCCAGCCCCGCCCTCTCAGATTAGCCTTCCCAAAGGCTCAGAGTGGC
GGTTCGAAGTCGCCTTTGGCACGACCGTCCGCGTAAAGCTCTTAGCCGGA
ACCGCCGAACTCTTTGGCACCGAACTAGCCCCCTCGCAAACCTACACCTT
CTCCGGCACGAAAGCAGCAATCTACACCTGGCATGGATGCACACTAGAAG
TAAGCGCCGGAGAGGCCATCACAGGTCTGGACAGCCTCGCCCCGGGAGGC
ACAAATGGAACAACGGCGCGCGGACTCGGCGCGGGCGGCTGCCAGAGCGA
GTACGTGGCGGAGGAAACACCGATGGTTGAATACGCGAACGTGCATTTTG
CGCTGGAGACACTACGACAGGAGGCCAAAGCGACAGGGAAAGATGGCCCG
CGGGTACTGATTCTCGGTCCTGAGGATGCGGGCAAGACAAGTCTGTCGAA
GATCCTGACGGCGTATGCGACTAAGGTGGGCCGGCAGCCGCTGGTGGTTA
ATTTGGATCCTACGGAGGGCATGCTAAGTGTTCCGGGGACGTTGACGGCT
ACGGCGTTCCGGACGATGATTGATGTTGAGGAAGGATGGGGGAGTAGTCC
CATGTCCGGGCCGAGTGCGGTGCCGGTGAAGTTGCCCTTGGTGTATTTCT
ATCCGATGCAGAACCCATTGGAGGCCGATGGCTCGGTGTATAAGGCTATT
GTGTCGAGGTTGGCGCTGTCGGTGACGGGGAGGATGGCGGAGGATGAGGA
TGCAAGGGAGACGGGAATTATTGTGGATACGCCGGGAATATTGAGTCAGA
GTAAGGCTGGGAATGTCGAGATGATTAATCATATTGTGACGGAGTTTGCG
ATTACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACAGCATCATGAT
GAAGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCAGCGGCGTCGG
ATGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTGTGTTGAT
CGCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCCGGACATA
CTTCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCGCTGTCGCTGT
CTGCGTCGTCAACGACGAATGTTACTTTGTCGCCACATGCGCAGCAGCTA
GACTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGTCAGCAGAGGA
GGACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGCGATGCCTTCC
TCCCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCCGCAAGAAGAG
GCTCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGGTGAAGGAGAC
GGTGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTACTGCCTC
CTGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATCACACATGCAAGC
TCGACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCATGGGCTTCTT
GTATGTGGCTGACGTGGACGCGGAGAAGGGCAAGATCCGAGTGCTGGCGC
CGGTTGGAGGTCGCGTGCCACCGCGGGCGATTGTATGGGGGAAGAAATGG
CCTGGGGAGGTGGTGGGATTGGTGGGATAGATGTCGCTCCCCGGTCTTGA
TCTAACACAACCCTCCGCGGACCGCGAGTTCGCGCCAGCCCCGCCCTCTC
AGATTAGCCTTCCCAAAGGCTCAGAGTGGCGGTTCGAAGTCGCCTTTGGC
ACGACCGTCCGCGTAAAGCTCTTAGCCGGAACCGCCGAACTCTTTGGCAC
CGAACTAGCCCCCTCGCAAACCTACACCTTCTCCGGCACGAAAGCAGCAA
TCTACACCTGGCATGGATGCACACTAGAAGTAAGCGCCGGAGAGGCCATC
ACAGGTCTGGACAGCCTCGCCCCGGGAGGCACAAATGGAACAACGGCGCG
CGGACTCGGCGCGGGCGGCTGCCAGAGCGAGTACGTGGCGGAGGAAACAC
CGATGGTTGAATACGCGAACGTGCATTTTGCGCTGGAGACACTACGACAG
GAGGCCAAAGCGACAGGGAAAGATGGCCCGCGGGTACTGATTCTCGGTCC
TGAGGATGCGGGCAAGACAAGTCTGTCGAAGATCCTGACGGCGTATGCGA
CTAAGGTGGGCCGGCAGCCGCTGGTGGTTAATTTGGATCCTACGGAGGGC
ATGCTAAGTGTTCCGGGGACGTTGACGGCTACGGCGTTCCGGACGATGAT
TGATGTTGAGGAAGGATGGGGGAGTAGTCCCATGTCCGGGCCGAGTGCGG
TGCCGGTGAAGTTGCCCTTGGTGTATTTCTATCCGATGCAGAACCCATTG
GAGGCCGATGGCTCGGTGTATAAGGCTATTGTGTCGAGGTTGGCGCTGTC
GGTGACGGGGAGGATGGCGGAGGATGAGGATGCAAGGGAGACGGGAATTA
TTGTGGATACGCCGGGAATATTGAGTCAGAGTAAGGCTGGGAATGTCGAG
ATGATTAATCATATTGTGACGGAGTTTGCGATTACGACGATCTTGGTCAT
TGGCTCCGAGCGACTGTACAGCATCATGATGAAGAACTTTGATAACAAGC
CCACGGCTAGTGCGTCTGCAGCGGCGTCGGATGAGCGCATTTCGGTGGTT
AAGTTGTCCAAGTCTGGGGGTTGTGTTGATCGCGATGCGGCGTTCATGAA
GGCTGTCAGCGAGTCGCAGATCCGGACATACTTCTTCGGCAACCCAATTC
CTTCGACGGCATCGGCAGCGCTGTCGCTGTCTGCGTCGTCAACGACGAAT
GTTACTTTGTCGCCACATGCGCAGCAGCTAGACTTCAACGCTTTAGCGGT
CTACAACTACACCATAGCGTCAGCAGAGGAGGACGAAGACGAATATGACC
CGTCGCAGCTGGGTACCGGCGATGCCTTCCTCCCAGGTGGAAGCAACGAC
GTGGACCTGGGTCAGACTCCGCAAGAAGAGGCTCCGGTCGCACCGACGCT
GCCTGGGATCGCTGGACCGGTGAAGGAGACGGTGACGCCGGCGGGGTCGT
CCAACGTGCCACTGAAGAAGGTACTGCCTCCTGCGCCGACAGCGCTGGCC
AATTCGCTGCTGGCCATCACACATGCAAGCTCGACGGCCAGCCCGGCGGA
TGTGCGCGATGCCAGTATCATGGGCTTCTTGTATGTGGCTGACGTGGACG
CGGAGAAGGGCAAGATCCGAGTGCTGGCGCCGGTTGGAGGTCGCGTGCCA
CCGCGGGCGATTGTATGGGGGAAGAAATGGCCTGGGGAGGTGGTGGGATT
GGTGGGATAGATGTCGCTCCCCGGTCTTGATCTAACACAACCCTCCGCGG
ACCGCGAGTTCGCGCCAGCCCCGCCCTCTCAGATTAGCCTTCCCAAAGGC
TCAGAGTGGCGGTTCGAAGTCGCCTTTGGCACGACCGTCCGCGTAAAGCT
CTTAGCCGGAACCGCCGAACTCTTTGGCACCGAACTAGCCCCCTCGCAAA
CCTACACCTTCTCCGGCACGAAAGCAGCAATCTACACCTGGCATGGATGC
ACACTAGAAGTAAGCGCCGGAGAGGCCATCACAGGTCTGGACAGCCTCGC
CCCGGGAGGCACAAATGGAACAACGGCGCGCGGACTCGGCGCGGGCGGCT
GCCAGAGCGAGTACGTGGCGGAGGAAACACCGATGGTTGAATACGCGAAC
GTGCATTTTGCGCTGGAGACACTACGACAGGAGGCCAAAGCGACAGGGAA
AGATGGCCCGCGGGTACTGATTCTCGGTCCTGAGGATGCGGGCAAGACAA
GTCTGTCGAAGATCCTGACGGCGTATGCGACTAAGGTGGGCCGGCAGCCG
CTGGTGGTTAATTTGGATCCTACGGAGGGCATGCTAAGTGTTCCGGGGAC
GTTGACGGCTACGGCGTTCCGGACGATGATTGATGTTGAGGAAGGATGGG
GGAGTAGTCCCATGTCCGGGCCGAGTGCGGTGCCGGTGAAGTTGCCCTTG
GTGTATTTCTATCCGATGCAGAACCCATTGGAGGCCGATGGCTCGGTGTA
TAAGGCTATTGTGTCGAGGTTGGCGCTGTCGGTGACGGGGAGGATGGCGG
AGGATGAGGATGCAAGGGAGACGGGAATTATTGTGGATACGCCGGGAATA
TTGAGTCAGAGTAAGGCTGGGAATGTCGAGATGATTAATCATATTGTGAC
GGAGTTTGCGATTACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACA
GCATCATGATGAAGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCA
GCGGCGTCGGATGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGG
TTGTGTTGATCGCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGA
TCCGGACATACTTCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCG
CTGTCGCTGTCTGCGTCGTCAACGACGAATGTTACTTTGTCGCCACATGC
GCAGCAGCTAGACTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGT
CAGCAGAGGAGGACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGC
GATGCCTTCCTCCCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCC
GCAAGAAGAGGCTCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGG
TGAAGGAGACGGTGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAG
GTACTGCCTCCTGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATCAC
ACATGCAAGCTCGACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCA
TGGGCTTCTTGTATGTGGCTGACGTGGACGCGGAGAAGGGCAAGATCCGA
GTGCTGGCGCCGGTTGGAGGTCGCGTGCCACCGCGGGCGATTGTATGGGG
GAAGAAATGGCCTGGGGAGGTGGTGGGATTGGTGGGATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005849mRNA cleavage factor complex
Vocabulary: Biological Process
TermDefinition
GO:0031124mRNA 3'-end processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CLP1ATCC64974_108090Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108090-T1.exon1ATCC64974_108090-T1.exon1Aspergillus niger N402exon
ATCC64974_108090-T1.exon2ATCC64974_108090-T1.exon2Aspergillus niger N402exon
ATCC64974_108090-T1.exon3ATCC64974_108090-T1.exon3Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108090-T1.cdsATCC64974_108090-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108090-T1ATCC64974_108090-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR028606
DBxrefInterPro:IPR010655
DBxrefInterPro:IPR038238
DBxrefInterPro:IPR032319
DBxrefInterPro:IPR038239
DBxrefInterPro:IPR032324
DBxrefPFAM:PF16575
DBxrefPFAM:PF16573
DBxrefPFAM:PF06807
ProductCleavage polyadenylation factor subunit clp1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:3900011..3901847 +
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