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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000003.1:721219..721736- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_13500-T1 ID=ATCC64974_13500-T1|Name=ATCC64974_13500-T1|organism=Aspergillus niger N402|type=mRNA|length=518bp|location=Sequence derived from alignment at OGUI01000003.1:721219..721736- (Aspergillus niger N402)
ATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGCCGCGGCGGAGG
CTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGGCGGTGCTGGTG
GCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGAAGGAAAACATC
CTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTCAAGTTCAATGG
CGGTCGTGAGGGTAAGATCCACCCCTACTGTTGCAATTTACATACACTCC
TGCTGATATTTGTGTCCAGTTATTGGTACGCTCAAGGGATACGACCAACT
TATGAATCTGGTCCTGGACGATGTCAAGGAATCCATGCGCGGTAAGCACA
CCCTGCAATTTCCACACCACGACTTTACTGACGGCCCCAGATGATGAGGG
CAACGAGAACACTCGCTCTCTGGGTCTCGTCGTGGCCCGTGGCACCATCA
TCGTCCTGATCTCGCCCGCCGACGGCAGCGAGGAGATTGCCAACCCCTTC
GTGCAACCCGAAGAGTAA back to topCoding sequence (CDS) from alignment at OGUI01000003.1:721219..721736- >ATCC64974_13500-T1 ID=ATCC64974_13500-T1|Name=ATCC64974_13500-T1|organism=Aspergillus niger N402|type=CDS|length=1233bp|location=Sequence derived from alignment at OGUI01000003.1:721219..721736- (Aspergillus niger N402)
ATGATGAGGGCAACGAGAACACTCGCTCTCTGGGTCTCGTCGTGGCCCGT
GGCACCATCATCGTCCTGATCTCGCCCGCCGACGGCAGCGAGGAGATTGC
CAACCCCTTCGTGCAACCCGAAGAGTAATTATTGGTACGCTCAAGGGATA
CGACCAACTTATGAATCTGGTCCTGGACGATGTCAAGGAATCCATGCGCG
ATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGCCGCGGCGGAGG
CTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGGCGGTGCTGGTG
GCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGAAGGAAAACATC
CTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTCAAGTTCAATGG
CGGTCGTGAGGATGATGAGGGCAACGAGAACACTCGCTCTCTGGGTCTCG
TCGTGGCCCGTGGCACCATCATCGTCCTGATCTCGCCCGCCGACGGCAGC
GAGGAGATTGCCAACCCCTTCGTGCAACCCGAAGAGTAATTATTGGTACG
CTCAAGGGATACGACCAACTTATGAATCTGGTCCTGGACGATGTCAAGGA
ATCCATGCGCGATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGC
CGCGGCGGAGGCTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGG
CGGTGCTGGTGGCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGA
AGGAAAACATCCTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTC
AAGTTCAATGGCGGTCGTGAGGATGATGAGGGCAACGAGAACACTCGCTC
TCTGGGTCTCGTCGTGGCCCGTGGCACCATCATCGTCCTGATCTCGCCCG
CCGACGGCAGCGAGGAGATTGCCAACCCCTTCGTGCAACCCGAAGAGTAA
TTATTGGTACGCTCAAGGGATACGACCAACTTATGAATCTGGTCCTGGAC
GATGTCAAGGAATCCATGCGCGATGTCCGAAAGAGGCTCGTTCCGTGGAG
GTGGCCGTGGCCGCGGCGGAGGCTATGACCGGTCTGGCGGTCGTGGCGCC
CACAGAGGTGGCGGTGCTGGTGGCGGTGCCCACCAGCAGCAGCAGCAGGA
GAAGCCCAAGAAGGAAAACATCCTCGACCTCAACAAGTATATGGACAAGG
AGGTGCGCGTCAAGTTCAATGGCGGTCGTGAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0000956 | nuclear-transcribed mRNA catabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_13500-T1 | ATCC64974_13500-T1-protein | Aspergillus niger N402 | polypeptide |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR017132 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | Sm-like protein lsm7 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000003.1 | supercontig | OGUI01000003.1:721219..721736 - |
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