You are here

Home

ATCC64974_19440-T1, ATCC64974_19440-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_19440-T1
Unique NameATCC64974_19440-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:2508208..2508952-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_19440-T1 ID=ATCC64974_19440-T1|Name=ATCC64974_19440-T1|organism=Aspergillus niger N402|type=mRNA|length=745bp|location=Sequence derived from alignment at OGUI01000003.1:2508208..2508952- (Aspergillus niger N402)
ATGCGTAAGTATCATCTCCTTGGTGAAATCGAATAGGCGAACTAATATGT
ATCCCATTGGGCAGCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATGT
AAGTTGCATATTCTGAAGATCACTCGGCGCGATTTTTGACGCAGCTGCTA
ACGATCTTTTATAGCCACCTGAGAGTGACTGGTGGTGAGGTCGGTGCCCA
GTCTGCTCTGGCCCCCAAGATTGGTCCTCTCGGTCTGTCCCCCAAGAAGA
TCGGTGAAGATATTGCCAAGAACACTGGTGACTGGGTAAGCACATCGTCC
GGGTCAACCATAGGAGGTTACAGTGCTAACAGCATCTTTTTGGTATTATA
GAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGTCAGGCCG
CGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGCCCTCAAG
GAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACAGCAAGTC
CATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGCCACCGCT
CTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGGTACCGCT
TTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACGTCTCCGA
CGACGTCAAGGCTGGCGAGATCGACAGTATGTTAACCACCATACGATATC
TTTCGAGACTTTGCCACTAACTATTTCGCAGTCCCCTCCGAGTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000003.1:2508208..2508952-

>ATCC64974_19440-T1 ID=ATCC64974_19440-T1|Name=ATCC64974_19440-T1|organism=Aspergillus niger N402|type=CDS|length=2490bp|location=Sequence derived from alignment at OGUI01000003.1:2508208..2508952- (Aspergillus niger N402)
TCCCCTCCGAGTAAAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAG
AACCGTCAGGCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCAT
CAAGGCCCTCAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCA
AGCACAGCAAGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAG
ATGCGCCACCGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGAT
CCTCGGTACCGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCA
AGGACGTCTCCGACGACGTCAAGGCTGGCGAGATCGACACCACCTGAGAG
TGACTGGTGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGT
CCTCTCGGTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACAC
TGGTGACTGGCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATATGCTC
CCCTCCGAGTAAAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAA
CCGTCAGGCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCA
AGGCCCTCAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAG
CACAGCAAGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGAT
GCGCCACCGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCC
TCGGTACCGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAG
GACGTCTCCGACGACGTCAAGGCTGGCGAGATCGACACCACCTGAGAGTG
ACTGGTGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCC
TCTCGGTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTG
GTGACTGGCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATATGCTCCC
CTCCGAGTAAAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACC
GTCAGGCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAG
GCCCTCAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCA
CAGCAAGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGC
GCCACCGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTC
GGTACCGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGA
CGTCTCCGACGACGTCAAGGCTGGCGAGATCGACACCACCTGAGAGTGAC
TGGTGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCCTC
TCGGTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTGGT
GACTGGCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATATGCTCCCCT
CCGAGTAAAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGT
CAGGCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGC
CCTCAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACA
GCAAGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGC
CACCGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGG
TACCGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACG
TCTCCGACGACGTCAAGGCTGGCGAGATCGACACCACCTGAGAGTGACTG
GTGGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCCTCTC
GGTCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTGGTGA
CTGGCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATATGCTCCCCTCC
GAGTAAAAGGGTCTCCGTGTCACCGTCCGCCTGACCATCCAGAACCGTCA
GGCCGCGGTCTCCGTTGTGCCCTCCGCCTCTTCCCTGGTCATCAAGGCCC
TCAAGGAGCCTCCCCGTGACCGCAAGAAGGAGAAGAACATCAAGCACAGC
AAGTCCATCCCTCTGGACGAGATCATCGAGATCGCCCGCAAGATGCGCCA
CCGCTCTCTTGCTAAGGAGCTCAAGGGTACCGTCCTTGAGATCCTCGGTA
CCGCTTTCTCCGTCGGTTGCCAGGTCGATGGCCGCAGCCCCAAGGACGTC
TCCGACGACGTCAAGGCTGGCGAGATCGACACCACCTGAGAGTGACTGGT
GGTGAGGTCGGTGCCCAGTCTGCTCTGGCCCCCAAGATTGGTCCTCTCGG
TCTGTCCCCCAAGAAGATCGGTGAAGATATTGCCAAGAACACTGGTGACT
GGCTCCCAAGTTCGACCCCAATGAGGTGAAGATCATATGC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL12ATCC64974_19440Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_19440-T1ATCC64974_19440-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_19440-T1.cdsATCC64974_19440-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_19440-T1.exon5ATCC64974_19440-T1.exon5Aspergillus niger N402exon
ATCC64974_19440-T1.exon4ATCC64974_19440-T1.exon4Aspergillus niger N402exon
ATCC64974_19440-T1.exon3ATCC64974_19440-T1.exon3Aspergillus niger N402exon
ATCC64974_19440-T1.exon2ATCC64974_19440-T1.exon2Aspergillus niger N402exon
ATCC64974_19440-T1.exon1ATCC64974_19440-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG092651LN
DBxrefInterPro:IPR020783
DBxrefInterPro:IPR036796
DBxrefInterPro:IPR036769
DBxrefInterPro:IPR020784
DBxrefInterPro:IPR000911
DBxrefPFAM:PF03946
DBxrefPFAM:PF00298
Product60S ribosomal protein L12
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:2508208..2508952 -
Powered by Drupal