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ATCC64974_20400-T1, ATCC64974_20400-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_20400-T1
Unique NameATCC64974_20400-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000003.1:2828946..2830193-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_20400-T1 ID=ATCC64974_20400-T1|Name=ATCC64974_20400-T1|organism=Aspergillus niger N402|type=mRNA|length=1248bp|location=Sequence derived from alignment at OGUI01000003.1:2828946..2830193- (Aspergillus niger N402)
ATGCCCCCCTCCCCCTGCGCCCGCTGCCACGACCAACGGGCAGTAATCAT
ACGGCCCAAGAACCGGCAAAAGCTCTGCCGCACCTGCTTCCTGCACGTCT
TCGAGACCGAAGTCCACGAAACCATCACCTCGACCTCTCTCTTCCACCCC
GGCGAACGAGTCGCCATCGGCGCCAGCGGCGGCAAAGACAGCACCGTCCT
GGCCGCCGTCCTCAAGACCCTCAACGAACGCTACAACTATGGACTCGACC
TATGCCTCCTCTCCATCGACGAAGGCATCAAGGGTTACCGCGACGACAGT
CTCGAGACCGTGAAACGCAACGCCCAACAATACAACATGCCGCTCGTAAT
CGTCAGCTACGGCGACCTGTACGGCTGGACAATGGACCAGGTGGTGGCGC
AGGTCGGCAAAAAGGGCAACTGCACATACTGCGGGGTATTTCGGCGGCAG
GCGCTGGATCGCGGGGCCGCGAAACTGGGCATTAAGCATGTGGTGACGGG
TCATAATGCGGATGATGTGGCGGAGACAGTGATGATGAATTTGCTGAGAG
GGGATTTGCCGCGCTTGTCGCGGGGCACGAGTATTGTGACGGGGTCCGCC
GCCAGTGATATTAAGAGGAGTAAGCCGTTGAAGTATGCTTATGAGAAGGA
GATCGTGCTGTATGCGCATCATCGCCAGTTGGATTATTTCTCTACGGAGT
GTATCTATTCGCCTGAGGCGTTTCGGGGTAGTGCGAGGACGTTGATTAAG
GATTTGGAGAAGATTAGGCCGTCGTCGATTTTGGATATTGTTAAGTCTGG
GGAGGATATGGCGCTTCTGGTGCCCACTGAGGTTAGGGGGAAGGGGGCTG
AGGATGAGGAGGGCGGTGGTGGTGGTGGGTGTGGGAGTCAGAATGGGCGG
ACGAGGGGTGGTGAGATGGCGGAGATGGAGAGGAAGTTGAAGGAGGATGA
GGCTGCCAAAGATAGGGAGATGGAGATTACTTCTGACAGCTTGTCTAGGA
GGCAGCAGCAGCAGTTGGAGCAGATGCAGACGCCGGCTCAGAAGAAGGTC
AAGTCGCAGGTACTGGGGACGTGTGAGCGCTGCGGTTATATCTCCAGTCA
GCGCGTGTGCAAGGCATGTACGCTTCTGGAGGGATTGAATAAGAATCGGC
CCAAGACGGCGATTGAGATGGAGATTGGTTTGGAAGATGAGGAGAGCAGC
TCGACGTTGCGCAGGCAGATGGAGAAGGTTGAGCTGGGGGGTGTTTGA
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Coding sequence (CDS) from alignment at OGUI01000003.1:2828946..2830193-

>ATCC64974_20400-T1 ID=ATCC64974_20400-T1|Name=ATCC64974_20400-T1|organism=Aspergillus niger N402|type=CDS|length=1248bp|location=Sequence derived from alignment at OGUI01000003.1:2828946..2830193- (Aspergillus niger N402)
ATGCCCCCCTCCCCCTGCGCCCGCTGCCACGACCAACGGGCAGTAATCAT
ACGGCCCAAGAACCGGCAAAAGCTCTGCCGCACCTGCTTCCTGCACGTCT
TCGAGACCGAAGTCCACGAAACCATCACCTCGACCTCTCTCTTCCACCCC
GGCGAACGAGTCGCCATCGGCGCCAGCGGCGGCAAAGACAGCACCGTCCT
GGCCGCCGTCCTCAAGACCCTCAACGAACGCTACAACTATGGACTCGACC
TATGCCTCCTCTCCATCGACGAAGGCATCAAGGGTTACCGCGACGACAGT
CTCGAGACCGTGAAACGCAACGCCCAACAATACAACATGCCGCTCGTAAT
CGTCAGCTACGGCGACCTGTACGGCTGGACAATGGACCAGGTGGTGGCGC
AGGTCGGCAAAAAGGGCAACTGCACATACTGCGGGGTATTTCGGCGGCAG
GCGCTGGATCGCGGGGCCGCGAAACTGGGCATTAAGCATGTGGTGACGGG
TCATAATGCGGATGATGTGGCGGAGACAGTGATGATGAATTTGCTGAGAG
GGGATTTGCCGCGCTTGTCGCGGGGCACGAGTATTGTGACGGGGTCCGCC
GCCAGTGATATTAAGAGGAGTAAGCCGTTGAAGTATGCTTATGAGAAGGA
GATCGTGCTGTATGCGCATCATCGCCAGTTGGATTATTTCTCTACGGAGT
GTATCTATTCGCCTGAGGCGTTTCGGGGTAGTGCGAGGACGTTGATTAAG
GATTTGGAGAAGATTAGGCCGTCGTCGATTTTGGATATTGTTAAGTCTGG
GGAGGATATGGCGCTTCTGGTGCCCACTGAGGTTAGGGGGAAGGGGGCTG
AGGATGAGGAGGGCGGTGGTGGTGGTGGGTGTGGGAGTCAGAATGGGCGG
ACGAGGGGTGGTGAGATGGCGGAGATGGAGAGGAAGTTGAAGGAGGATGA
GGCTGCCAAAGATAGGGAGATGGAGATTACTTCTGACAGCTTGTCTAGGA
GGCAGCAGCAGCAGTTGGAGCAGATGCAGACGCCGGCTCAGAAGAAGGTC
AAGTCGCAGGTACTGGGGACGTGTGAGCGCTGCGGTTATATCTCCAGTCA
GCGCGTGTGCAAGGCATGTACGCTTCTGGAGGGATTGAATAAGAATCGGC
CCAAGACGGCGATTGAGATGGAGATTGGTTTGGAAGATGAGGAGAGCAGC
TCGACGTTGCGCAGGCAGATGGAGAAGGTTGAGCTGGGGGGTGTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
GO:0034227tRNA thio-modification
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NCS6ATCC64974_20400Aspergillus niger N402gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20400-T1.cdsATCC64974_20400-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20400-T1.exon1ATCC64974_20400-T1.exon1Aspergillus niger N402exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_20400-T1ATCC64974_20400-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262IZ6
DBxrefInterPro:IPR000541
DBxrefInterPro:IPR032442
DBxrefInterPro:IPR011063
DBxrefPFAM:PF16503
DBxrefPFAM:PF01171
Productnucleotidyltransferase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000003.1supercontigOGUI01000003.1:2828946..2830193 -
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