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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000004.1:525998..526478+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_28230-T1 ID=ATCC64974_28230-T1|Name=ATCC64974_28230-T1|organism=Aspergillus niger N402|type=mRNA|length=481bp|location=Sequence derived from alignment at OGUI01000004.1:525998..526478+ (Aspergillus niger N402)
ATGAGCGCCCAGGCATACTACGAGCTCTATCGCGGGAGCAGGTACGATAG
GGTCTGCGACGACATGTCAGGAAATACCACTAACCCTCCGCAACAGCCTC
GGACTCTCCCTGACCGATACCCTCGATGACCTGATCAACGAAGGACGGAT
CGAGCCCCAGCTCGCCATGAAGATCCTCTCAACTTTCGATCGCGTGATCA
CAGAGGTGCTGGCAGACAAAGTGCGCGCTCGTCTGACTTTCAAGGTACGC
TTGCATATGAGGATAAGGAAGGCTGCGCTTGGAGCAGATGAAGGAGGCGA
ACTGAGGCTGACATGGCTTTTCTTACCACCACAGGGACATCTTGATACCT
ACCGATTCTGCGACGAAGTGTGGACATTCCTTATCAAGGACGTTACTTTC
AAGCTGGATAACCAGACTACGGTCTCCGCGGATAAAGTGAAGATTGTGAG
CTGCAATAGCAAGAGGCCTGGTGAAGCCTAA back to topCoding sequence (CDS) from alignment at OGUI01000004.1:525998..526478+ >ATCC64974_28230-T1 ID=ATCC64974_28230-T1|Name=ATCC64974_28230-T1|organism=Aspergillus niger N402|type=CDS|length=1008bp|location=Sequence derived from alignment at OGUI01000004.1:525998..526478+ (Aspergillus niger N402)
ATGAGCGCCCAGGCATACTACGAGCTCTATCGCGGGAGCAGCCTCGGACT
CTCCCTGACCGATACCCTCGATGACCTGATCAACGAAGGACGGATCGAGC
CCCAGCTCGCCATGAAGATCCTCTCAACTTTCGATCGCGTGATCACAGAG
GTGCTGGCAGACAAAGTGCGCGCTCGTCTGACTTTCAAGGGACATCTTGA
TACCTACCGATTCTGCGACGAAGTGTGGACATTCCTTATCAAGGACGTTA
CTTTCAAGCTGGATAACCAGACTACGGTCTCCGCGGATAAAGTGAAGATT
GTGAGCTGCAATAGCAAGAGGCCTGGTGAAGCCTAAATGAGCGCCCAGGC
ATACTACGAGCTCTATCGCGGGAGCAGCCTCGGACTCTCCCTGACCGATA
CCCTCGATGACCTGATCAACGAAGGACGGATCGAGCCCCAGCTCGCCATG
AAGATCCTCTCAACTTTCGATCGCGTGATCACAGAGGTGCTGGCAGACAA
AGTGCGCGCTCGTCTGACTTTCAAGGGACATCTTGATACCTACCGATTCT
GCGACGAAGTGTGGACATTCCTTATCAAGGACGTTACTTTCAAGCTGGAT
AACCAGACTACGGTCTCCGCGGATAAAGTGAAGATTGTGAGCTGCAATAG
CAAGAGGCCTGGTGAAGCCTAAATGAGCGCCCAGGCATACTACGAGCTCT
ATCGCGGGAGCAGCCTCGGACTCTCCCTGACCGATACCCTCGATGACCTG
ATCAACGAAGGACGGATCGAGCCCCAGCTCGCCATGAAGATCCTCTCAAC
TTTCGATCGCGTGATCACAGAGGTGCTGGCAGACAAAGTGCGCGCTCGTC
TGACTTTCAAGGGACATCTTGATACCTACCGATTCTGCGACGAAGTGTGG
ACATTCCTTATCAAGGACGTTACTTTCAAGCTGGATAACCAGACTACGGT
CTCCGCGGATAAAGTGAAGATTGTGAGCTGCAATAGCAAGAGGCCTGGTG
AAGCCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005672 | transcription factor TFIIA complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_28230-T1 | ATCC64974_28230-T1-protein | Aspergillus niger N402 | polypeptide |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265ER6 |
| DBxref | InterPro:IPR009083 |
| DBxref | InterPro:IPR015872 |
| DBxref | InterPro:IPR015871 |
| DBxref | InterPro:IPR003194 |
| DBxref | InterPro:IPR009088 |
| DBxref | PFAM:PF02268 |
| DBxref | PFAM:PF02751 |
| Product | Transcription initiation factor IIA small chain (TFIIA 13.5 kDa subunit) |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000004.1 | supercontig | OGUI01000004.1:525998..526478 + |
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