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ATCC64974_28370-T1, ATCC64974_28370-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_28370-T1
Unique NameATCC64974_28370-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000004.1:571432..572387-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_28370-T1 ID=ATCC64974_28370-T1|Name=ATCC64974_28370-T1|organism=Aspergillus niger N402|type=mRNA|length=956bp|location=Sequence derived from alignment at OGUI01000004.1:571432..572387- (Aspergillus niger N402)
ATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATT
CAAGTATGTCCCGCCTGCAGCATAGCTAGCTTTCGGCTTTCCTTAATGTG
CGGCTAATCGAATTGCAGGCTGGTTTTCTTGGGCGAGCAGAGTGGTACGG
ATATCTTCTGCGACGAGACTCCAATCATTGGCGCCACCCGGTCTCTGACA
TCTGCCTTACAGTTGGAAAAACCTCATTGATCACACGGTTCATGTACGAT
TCATTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAA
GGTATACTACGCCTAGTCGACTGCTTGTGCCCTGCATTAGCAGGCCCTCA
CCGAGCCATTCTCACACGGTCTCATGCTTTCCAATATGCTCGCGCTGCTG
CAAAAAGCTAATTTGCATCGCTCGTCTTAGACTATGTACCTGGAAGACAG
AACTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGAT
CTTTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTAC
GATATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGGATCGATGA
TGTACGTGGGGAACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACA
AGACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAG
GAGGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGG
CCACAATGTGAAACAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCA
TGGAGGGTGAAGCCAACCGGGGAGACAACCAGAGTACGTTATCCTTTCCC
CGCCCATGGCTCGAGTTACACGGGATGAGTACTGACAACTCTTACAGTGA
TCGATGTCAACATTACCCCGAAAGAGACCACGACCAACGACGGATGCGCC
TGCTAG
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Coding sequence (CDS) from alignment at OGUI01000004.1:571432..572387-

>ATCC64974_28370-T1 ID=ATCC64974_28370-T1|Name=ATCC64974_28370-T1|organism=Aspergillus niger N402|type=CDS|length=3150bp|location=Sequence derived from alignment at OGUI01000004.1:571432..572387- (Aspergillus niger N402)
TGATCGATGTCAACATTACCCCGAAAGAGACCACGACCAACGACGGATGC
GCCTGCTAGACTATGTACCTGGAAGACAGAACTGTGCGCCTTCAACTTTG
GGACACAGCTGGTCAAGAACGTTTCCGATCTTTGATTCCTTCCTACATCC
GTGACTCCAGTGTCGCTGTGGTGGTCTACGATATCTCCAACGCCAAGTCT
TTCCAGAACACACGCAAATGGATCGATGATGTACGTGGGGAACGCGGTAA
CGATGTCATCATCGTCCTGGTGGGCAACAAGACCGATCTGAACGACAAGC
GCGAGGTCACGACGGCGCAGGGCGAGGAGGAGGCGAAGAAGAACGGCTTG
ATGTTCATTGAGACCAGTGCTAAAGTCGGCCACAATGTGAAACAGCTTTT
CAGGAGAATTGCGCAAGCCCTACCGGGCATGGAGGGTGAAGCCAACCGGG
GAGACAACCAGATTGGAAAAACCTCATTGATCACACGGTTCATGTACGAT
TCATTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAA
GGCTGGTTTTCTTGGGCGAGCAGAGTGATGGCATCCACCTCCGGGGTAGG
GTCGTATTCGAACCCTCTGAAGAAATTCAATGATCGATGTCAACATTACC
CCGAAAGAGACCACGACCAACGACGGATGCGCCTGCTAGACTATGTACCT
GGAAGACAGAACTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAAC
GTTTCCGATCTTTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTG
GTGGTCTACGATATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATG
GATCGATGATGTACGTGGGGAACGCGGTAACGATGTCATCATCGTCCTGG
TGGGCAACAAGACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAG
GGCGAGGAGGAGGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGC
TAAAGTCGGCCACAATGTGAAACAGCTTTTCAGGAGAATTGCGCAAGCCC
TACCGGGCATGGAGGGTGAAGCCAACCGGGGAGACAACCAGATTGGAAAA
ACCTCATTGATCACACGGTTCATGTACGATTCATTCGACAACACGTACCA
AGCTACCATTGGAATCGATTTCTTGTCAAAGGCTGGTTTTCTTGGGCGAG
CAGAGTGATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTCTGA
AGAAATTCAATGATCGATGTCAACATTACCCCGAAAGAGACCACGACCAA
CGACGGATGCGCCTGCTAGACTATGTACCTGGAAGACAGAACTGTGCGCC
TTCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGATCTTTGATTCCT
TCCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTACGATATCTCCAA
CGCCAAGTCTTTCCAGAACACACGCAAATGGATCGATGATGTACGTGGGG
AACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACAAGACCGATCTG
AACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAGGAGGCGAAGAA
GAACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGGCCACAATGTGA
AACAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCATGGAGGGTGAA
GCCAACCGGGGAGACAACCAGATTGGAAAAACCTCATTGATCACACGGTT
CATGTACGATTCATTCGACAACACGTACCAAGCTACCATTGGAATCGATT
TCTTGTCAAAGGCTGGTTTTCTTGGGCGAGCAGAGTGATGGCATCCACCT
CCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATTCAATGATCGATGT
CAACATTACCCCGAAAGAGACCACGACCAACGACGGATGCGCCTGCTAGA
CTATGTACCTGGAAGACAGAACTGTGCGCCTTCAACTTTGGGACACAGCT
GGTCAAGAACGTTTCCGATCTTTGATTCCTTCCTACATCCGTGACTCCAG
TGTCGCTGTGGTGGTCTACGATATCTCCAACGCCAAGTCTTTCCAGAACA
CACGCAAATGGATCGATGATGTACGTGGGGAACGCGGTAACGATGTCATC
ATCGTCCTGGTGGGCAACAAGACCGATCTGAACGACAAGCGCGAGGTCAC
GACGGCGCAGGGCGAGGAGGAGGCGAAGAAGAACGGCTTGATGTTCATTG
AGACCAGTGCTAAAGTCGGCCACAATGTGAAACAGCTTTTCAGGAGAATT
GCGCAAGCCCTACCGGGCATGGAGGGTGAAGCCAACCGGGGAGACAACCA
GATTGGAAAAACCTCATTGATCACACGGTTCATGTACGATTCATTCGACA
ACACGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAAGGCTGGTTTT
CTTGGGCGAGCAGAGTGATGGCATCCACCTCCGGGGTAGGGTCGTATTCG
AACCCTCTGAAGAAATTCAATGATCGATGTCAACATTACCCCGAAAGAGA
CCACGACCAACGACGGATGCGCCTGCTAGACTATGTACCTGGAAGACAGA
ACTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGATC
TTTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTACG
ATATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGGATCGATGAT
GTACGTGGGGAACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACAA
GACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAGG
AGGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGGC
CACAATGTGAAACAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCAT
GGAGGGTGAAGCCAACCGGGGAGACAACCAGATTGGAAAAACCTCATTGA
TCACACGGTTCATGTACGATTCATTCGACAACACGTACCAAGCTACCATT
GGAATCGATTTCTTGTCAAAGGCTGGTTTTCTTGGGCGAGCAGAGTGATG
GCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATTCAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAB6AATCC64974_28370Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_28370-T1ATCC64974_28370-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_28370-T1.cdsATCC64974_28370-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_28370-T1.exon5ATCC64974_28370-T1.exon5Aspergillus niger N402exon
ATCC64974_28370-T1.exon4ATCC64974_28370-T1.exon4Aspergillus niger N402exon
ATCC64974_28370-T1.exon3ATCC64974_28370-T1.exon3Aspergillus niger N402exon
ATCC64974_28370-T1.exon2ATCC64974_28370-T1.exon2Aspergillus niger N402exon
ATCC64974_28370-T1.exon1ATCC64974_28370-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09264JHE
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR001806
DBxrefInterPro:IPR005225
DBxrefPFAM:PF09439
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF01926
DBxrefPFAM:PF04670
DBxrefPFAM:PF00025
ProductRas- protein Rab-6A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000004.1supercontigOGUI01000004.1:571432..572387 -
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