You are here

Home

ATCC64974_3560-T1, ATCC64974_3560-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_3560-T1
Unique NameATCC64974_3560-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000001.1:1079902..1081466-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_3560-T1 ID=ATCC64974_3560-T1|Name=ATCC64974_3560-T1|organism=Aspergillus niger N402|type=mRNA|length=1565bp|location=Sequence derived from alignment at OGUI01000001.1:1079902..1081466- (Aspergillus niger N402)
ATGCAGTCTATGCCATTGCTGCTCAGGCAGTCCTTCAAATCAACTCTCAA
CCTCACCCGAACAACCCGCCCAGTCCAACGACGACCGCTCCTGCCCGCCG
TTGGACCGAACTCTCTTTACCCTGCACCGCGGAACTTCTCCATCTGCCTG
CAATGTCAATTCCGAACCCAGTCCTCGCTTTACTCGTCTGATTCCCTCAA
AGACGGGAAGCCTGCTGAGCAGCCGAAAGAAGATGCAAGCCCAGTCATAG
CTCTTCCCGCAGGGAACGCAAATCTAGAAGCCGATGCGGGGAGTCAGCAA
CAGGCTCCTCCCGCTGCTGCGGAGGCGGGCGAAAGTACACAAAGCCAGCA
GCAGCAGCAGCAGCAGCAGCAAGAAGAGAAGAGCGAGGCCAATGGAAAGG
GATGGGGAGATGGAGGGCTTCCATCCTACATAGAGCAACGCAGGTCACAA
TTCACAAAGCGGTTCAGTGATGTGATGGACAACCTGCAGTCCAACATTTT
CGTGGCAGGACAGCGATTGAATGATCTTACGGGCTATTCGGCGATCGAAA
TGTTGAAGAAGGAGATTCACAGACAAGGTATGTGGCACCCATATTCCATA
ACTTAATCATTAGAACTATTGTTTCTAACCTTTGACATGGGTGAATAGAG
GAGCGACTCCGCACCGCCCGCCTCCAAGTCCGCACAGCGAAAGATGCCTA
CGCAGCTGCCATCAACAACCGATCGACCTCCCAGCGCGAAGTCAATGAGC
TTCTCCAGCGCAAACATGCCTGGTCCCCCACTGACCTGGAACGATTCACC
CACCTCTACCGCAACGACCACACCAACGAAGTAGCCGAGCACGAAGCACA
GGAGGCTTTGAGCCAGGCCGAACACGAGGCCGAAGAGGCCGCTGCACAAT
TGAGCAAGAGCATTTTGTCCCGGTATCACGAGGAACAAGTCTGGTCGGAC
AAGATCCGCCAAATGAGTACTTGGGGTACCTGGGGCCTGATGGGCGTCAA
CGTTCTTCTGTTCCTGATATTTCAAATCGCCGTGGAACCCTGGCGTCGCA
AGAGACTCGTCAAGGGCTTCGAAGAGAAGGTCATCGAAGCCATTGAGAAG
GAAAAGGCGCTTGATCGCATTCAGATCGTGACTGCTCAGAACCAGATGGC
GCAGGAATCGTCTACTACATCTACCGCCTCTACAGCGACTCCTGAGACCG
CTGAGACCGCTGAGACCGCAGAACCATCTGCCTCTCCCGCAGATGAGCCA
ATCGCTGATACCGATGCAATCGTCACGATTGAGAGCACCGAACCAGAGGT
ATTTAGTTCGGATCCAGCTGATGCCGAACCGCCAGCCAATACCATAGTCA
GCAAACCCACCCCTGACAATATCCGGGAGTATATCAAATTCCAGCTCGCG
CGCGTCTCTCCCCTCTTAGAATCCTTGCGCCAATATCTCCACGATCTCTT
CAGTGACCGCCAAGTCGTGCTCACGCAACGAGACCTCTCTACTGTTGCTC
TGCAAAGCGCTGCTGCTGGTGCGGCGGTGATCGGCATGTTGTCGATGATT
ATTCGGCAACGGTGA
back to top

Coding sequence (CDS) from alignment at OGUI01000001.1:1079902..1081466-

>ATCC64974_3560-T1 ID=ATCC64974_3560-T1|Name=ATCC64974_3560-T1|organism=Aspergillus niger N402|type=CDS|length=2988bp|location=Sequence derived from alignment at OGUI01000001.1:1079902..1081466- (Aspergillus niger N402)
AGGAGCGACTCCGCACCGCCCGCCTCCAAGTCCGCACAGCGAAAGATGCC
TACGCAGCTGCCATCAACAACCGATCGACCTCCCAGCGCGAAGTCAATGA
GCTTCTCCAGCGCAAACATGCCTGGTCCCCCACTGACCTGGAACGATTCA
CCCACCTCTACCGCAACGACCACACCAACGAAGTAGCCGAGCACGAAGCA
CAGGAGGCTTTGAGCCAGGCCGAACACGAGGCCGAAGAGGCCGCTGCACA
ATTGAGCAAGAGCATTTTGTCCCGGTATCACGAGGAACAAGTCTGGTCGG
ACAAGATCCGCCAAATGAGTACTTGGGGTACCTGGGGCCTGATGGGCGTC
AACGTTCTTCTGTTCCTGATATTTCAAATCGCCGTGGAACCCTGGCGTCG
CAAGAGACTCGTCAAGGGCTTCGAAGAGAAGGTCATCGAAGCCATTGAGA
AGGAAAAGGCGCTTGATCGCATTCAGATCGTGACTGCTCAGAACCAGATG
GCGCAGGAATCGTCTACTACATCTACCGCCTCTACAGCGACTCCTGAGAC
CGCTGAGACCGCTGAGACCGCAGAACCATCTGCCTCTCCCGCAGATGAGC
CAATCGCTGATACCGATGCAATCGTCACGATTGAGAGCACCGAACCAGAG
GTATTTAGTTCGGATCCAGCTGATGCCGAACCGCCAGCCAATACCATAGT
CAGCAAACCCACCCCTGACAATATCCGGGAGTATATCAAATTCCAGCTCG
CGCGCGTCTCTCCCCTCTTAGAATCCTTGCGCCAATATCTCCACGATCTC
TTCAGTGACCGCCAAGTCGTGCTCACGCAACGAGACCTCTCTACTGTTGC
TCTGCAAAGCGCTGCTGCTGGTGCGGCGGTGATCGGCATGTTGTCGATGA
TTATTCGGCAACGGTGAATGCAGTCTATGCCATTGCTGCTCAGGCAGTCC
TTCAAATCAACTCTCAACCTCACCCGAACAACCCGCCCAGTCCAACGACG
ACCGCTCCTGCCCGCCGTTGGACCGAACTCTCTTTACCCTGCACCGCGGA
ACTTCTCCATCTGCCTGCAATGTCAATTCCGAACCCAGTCCTCGCTTTAC
TCGTCTGATTCCCTCAAAGACGGGAAGCCTGCTGAGCAGCCGAAAGAAGA
TGCAAGCCCAGTCATAGCTCTTCCCGCAGGGAACGCAAATCTAGAAGCCG
ATGCGGGGAGTCAGCAACAGGCTCCTCCCGCTGCTGCGGAGGCGGGCGAA
AGTACACAAAGCCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAGAGAAGAG
CGAGGCCAATGGAAAGGGATGGGGAGATGGAGGGCTTCCATCCTACATAG
AGCAACGCAGGTCACAATTCACAAAGCGGTTCAGTGATGTGATGGACAAC
CTGCAGTCCAACATTTTCGTGGCAGGACAGCGATTGAATGATCTTACGGG
CTATTCGGCGATCGAAATGTTGAAGAAGGAGATTCACAGACAAGAGGAGC
GACTCCGCACCGCCCGCCTCCAAGTCCGCACAGCGAAAGATGCCTACGCA
GCTGCCATCAACAACCGATCGACCTCCCAGCGCGAAGTCAATGAGCTTCT
CCAGCGCAAACATGCCTGGTCCCCCACTGACCTGGAACGATTCACCCACC
TCTACCGCAACGACCACACCAACGAAGTAGCCGAGCACGAAGCACAGGAG
GCTTTGAGCCAGGCCGAACACGAGGCCGAAGAGGCCGCTGCACAATTGAG
CAAGAGCATTTTGTCCCGGTATCACGAGGAACAAGTCTGGTCGGACAAGA
TCCGCCAAATGAGTACTTGGGGTACCTGGGGCCTGATGGGCGTCAACGTT
CTTCTGTTCCTGATATTTCAAATCGCCGTGGAACCCTGGCGTCGCAAGAG
ACTCGTCAAGGGCTTCGAAGAGAAGGTCATCGAAGCCATTGAGAAGGAAA
AGGCGCTTGATCGCATTCAGATCGTGACTGCTCAGAACCAGATGGCGCAG
GAATCGTCTACTACATCTACCGCCTCTACAGCGACTCCTGAGACCGCTGA
GACCGCTGAGACCGCAGAACCATCTGCCTCTCCCGCAGATGAGCCAATCG
CTGATACCGATGCAATCGTCACGATTGAGAGCACCGAACCAGAGGTATTT
AGTTCGGATCCAGCTGATGCCGAACCGCCAGCCAATACCATAGTCAGCAA
ACCCACCCCTGACAATATCCGGGAGTATATCAAATTCCAGCTCGCGCGCG
TCTCTCCCCTCTTAGAATCCTTGCGCCAATATCTCCACGATCTCTTCAGT
GACCGCCAAGTCGTGCTCACGCAACGAGACCTCTCTACTGTTGCTCTGCA
AAGCGCTGCTGCTGGTGCGGCGGTGATCGGCATGTTGTCGATGATTATTC
GGCAACGGTGAATGCAGTCTATGCCATTGCTGCTCAGGCAGTCCTTCAAA
TCAACTCTCAACCTCACCCGAACAACCCGCCCAGTCCAACGACGACCGCT
CCTGCCCGCCGTTGGACCGAACTCTCTTTACCCTGCACCGCGGAACTTCT
CCATCTGCCTGCAATGTCAATTCCGAACCCAGTCCTCGCTTTACTCGTCT
GATTCCCTCAAAGACGGGAAGCCTGCTGAGCAGCCGAAAGAAGATGCAAG
CCCAGTCATAGCTCTTCCCGCAGGGAACGCAAATCTAGAAGCCGATGCGG
GGAGTCAGCAACAGGCTCCTCCCGCTGCTGCGGAGGCGGGCGAAAGTACA
CAAAGCCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAGAGAAGAGCGAGGC
CAATGGAAAGGGATGGGGAGATGGAGGGCTTCCATCCTACATAGAGCAAC
GCAGGTCACAATTCACAAAGCGGTTCAGTGATGTGATGGACAACCTGCAG
TCCAACATTTTCGTGGCAGGACAGCGATTGAATGATCTTACGGGCTATTC
GGCGATCGAAATGTTGAAGAAGGAGATTCACAGACAAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SHE9ATCC64974_3560Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_3560-T1ATCC64974_3560-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_3560-T1.cdsATCC64974_3560-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_3560-T1.exon2ATCC64974_3560-T1.exon2Aspergillus niger N402exon
ATCC64974_3560-T1.exon1ATCC64974_3560-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09264LJU
DBxrefInterPro:IPR008839
DBxrefPFAM:PF05546
Productsensitivity to high expression protein she9
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000001.1supercontigOGUI01000001.1:1079902..1081466 -
Powered by Drupal