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ATCC64974_38180-T1, ATCC64974_38180-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_38180-T1
Unique NameATCC64974_38180-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000005.1:1600973..1601719-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_38180-T1 ID=ATCC64974_38180-T1|Name=ATCC64974_38180-T1|organism=Aspergillus niger N402|type=mRNA|length=747bp|location=Sequence derived from alignment at OGUI01000005.1:1600973..1601719- (Aspergillus niger N402)
ATGAGCACCCTCGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGC
CTACTATCTGGGCAAGGTGAGCTTCATCTCTACGACTAGCGGACCATGAC
AATACTAATTCATTAATCCTCTCCAGAACAAGCGTCGCAAGTTCAGCCAT
GATGAGGGCGAGAAACCCGAAGATCCCACCGACAACCTCAAGGATGCCAC
CACTCTCTACGTTGGCAATCTGTATGTTACAGAGTATCTCCGTTGTCAAG
TCCTTGCTAACAACACAAGTTCTTTTTACACCACCGAAGAGCAGATCCAT
GAGCTATTTGCCAAGTGAGCGGAAACCACCACCGAATGCGTTATCGACGA
GTACCGAGCTGATGGAGTACAGGTGCGGCGAGATTAAGCGGCTAGTCATG
GGCCTTGACCGGTACAACAAGACCCCCTGCGGATTTTGCTTCGTCGAATA
TTACACCCATCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAA
AGCTGGACGAGAGAATCATCCGGACGGATCTGGATCCTGGCTTCGAGGAG
GGTCGGCAATACGGGTATGTATATGATCGGGATTCTCGAACGCGCAGGCT
GCTGACGTTGGTAGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTA
CCGGGAGGAATACGACCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGG
ATGACCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGGTAAGTAA
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Coding sequence (CDS) from alignment at OGUI01000005.1:1600973..1601719-

>ATCC64974_38180-T1 ID=ATCC64974_38180-T1|Name=ATCC64974_38180-T1|organism=Aspergillus niger N402|type=CDS|length=2655bp|location=Sequence derived from alignment at OGUI01000005.1:1600973..1601719- (Aspergillus niger N402)
ACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACG
ACCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGA
CGGGAGGAGGAGGAGTATGGTAAGGGTAAGTAAGTGCGGCGAGATTAAGC
GGCTAGTCATGGGCCTTGACCGGTACAACAAGACCCCCTGCGGATTTTGC
TTCGTCGAATATTACACCCATCAGGATGCGCTGGACTGTCTGAAATACAT
TGGTGGCACAAAGCTGGACGAGAGAATCATCCGGACGGATCTGGATCCTG
GCTTCGAGGAGGGTCGGCAATACGGTTCTTTTTACACCACCGAAGAGCAG
ATCCATGAGCTATTTGCCAAAACAAGCGTCGCAAGTTCAGCCATGATGAG
GGCGAGAAACCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCT
CTACGTTGGCAATCTATGAGCACCCTCGTCCACAACACCGTCGAACGCCT
GGACCGGCCGAGTGCCTACTATCTGGGCAAGACGTGGTAAATCGGGTGGT
CAGGTCCGCGATGAGTACCGGGAGGAATACGACCCTGGTCGCGGTGGCTA
TGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAGGAGGAGTATG
GTAAGGGTAAGTAAGTGCGGCGAGATTAAGCGGCTAGTCATGGGCCTTGA
CCGGTACAACAAGACCCCCTGCGGATTTTGCTTCGTCGAATATTACACCC
ATCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGAC
GAGAGAATCATCCGGACGGATCTGGATCCTGGCTTCGAGGAGGGTCGGCA
ATACGGTTCTTTTTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCA
AAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAACCCGAAGATC
CCACCGACAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTATGA
GCACCCTCGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTAC
TATCTGGGCAAGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACC
GGGAGGAATACGACCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGAT
GACCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGGTAAGTAAGTGCG
GCGAGATTAAGCGGCTAGTCATGGGCCTTGACCGGTACAACAAGACCCCC
TGCGGATTTTGCTTCGTCGAATATTACACCCATCAGGATGCGCTGGACTG
TCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGGACGG
ATCTGGATCCTGGCTTCGAGGAGGGTCGGCAATACGGTTCTTTTTACACC
ACCGAAGAGCAGATCCATGAGCTATTTGCCAAAACAAGCGTCGCAAGTTC
AGCCATGATGAGGGCGAGAAACCCGAAGATCCCACCGACAACCTCAAGGA
TGCCACCACTCTCTACGTTGGCAATCTATGAGCACCCTCGTCCACAACAC
CGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGACGTGGT
AAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACGACCCTGG
TCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGG
AGGAGGAGTATGGTAAGGGTAAGTAAGTGCGGCGAGATTAAGCGGCTAGT
CATGGGCCTTGACCGGTACAACAAGACCCCCTGCGGATTTTGCTTCGTCG
AATATTACACCCATCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGC
ACAAAGCTGGACGAGAGAATCATCCGGACGGATCTGGATCCTGGCTTCGA
GGAGGGTCGGCAATACGGTTCTTTTTACACCACCGAAGAGCAGATCCATG
AGCTATTTGCCAAAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGA
AACCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTACGTT
GGCAATCTATGAGCACCCTCGTCCACAACACCGTCGAACGCCTGGACCGG
CCGAGTGCCTACTATCTGGGCAAGACGTGGTAAATCGGGTGGTCAGGTCC
GCGATGAGTACCGGGAGGAATACGACCCTGGTCGCGGTGGCTATGGACGT
GCCTATGCGGATGACCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGG
TAAGTAAGTGCGGCGAGATTAAGCGGCTAGTCATGGGCCTTGACCGGTAC
AACAAGACCCCCTGCGGATTTTGCTTCGTCGAATATTACACCCATCAGGA
TGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAA
TCATCCGGACGGATCTGGATCCTGGCTTCGAGGAGGGTCGGCAATACGGT
TCTTTTTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCAAAACAAG
CGTCGCAAGTTCAGCCATGATGAGGGCGAGAAACCCGAAGATCCCACCGA
CAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTATGAGCACCCT
CGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGG
GCAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBP20ATCC64974_38180Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_38180-T1ATCC64974_38180-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_38180-T1.cdsATCC64974_38180-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_38180-T1.exon5ATCC64974_38180-T1.exon5Aspergillus niger N402exon
ATCC64974_38180-T1.exon4ATCC64974_38180-T1.exon4Aspergillus niger N402exon
ATCC64974_38180-T1.exon3ATCC64974_38180-T1.exon3Aspergillus niger N402exon
ATCC64974_38180-T1.exon2ATCC64974_38180-T1.exon2Aspergillus niger N402exon
ATCC64974_38180-T1.exon1ATCC64974_38180-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09264G04
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034148
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00076
ProductNuclear cap-binding protein subunit 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000005.1supercontigOGUI01000005.1:1600973..1601719 -
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