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ATCC64974_39030-T1, ATCC64974_39030-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_39030-T1
Unique NameATCC64974_39030-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000006.1:5448..5843-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_39030-T1 ID=ATCC64974_39030-T1|Name=ATCC64974_39030-T1|organism=Aspergillus niger N402|type=mRNA|length=396bp|location=Sequence derived from alignment at OGUI01000006.1:5448..5843- (Aspergillus niger N402)
ATGATTATCCCCGTCCGCTGTTTTTCTTGCGGCAAGGTACGTGGCACTTG
AAACCCATATTCGCTTCTCAAATCTCATGCAATGTAAATCTTCAGGTTGT
CGGAGATCTCTGGGAACGTTATCTTCAACTTCTTGATGAGGGTATACCCG
ATGGGTAGGTATTGGTGGTTTATTTCCTATCTACGGCGACGAACTAACTG
GTACTTGAAAGTGACGCCATGGATCAGCTTGGATGCAAGCGGTACTGTTG
CCGCAGAATGATTATGACCCATGTCGATCTGATAGAGAAACTTCTGAGGT
AAGTGCCCACTCGGCTGGAAGTACATGCACGTGAGGACTCATTTCTTCAA
TAGATATAATCCTACTGAAAGAGACCGAGCGAAGAACCAAATATGA
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Coding sequence (CDS) from alignment at OGUI01000006.1:5448..5843-

>ATCC64974_39030-T1 ID=ATCC64974_39030-T1|Name=ATCC64974_39030-T1|organism=Aspergillus niger N402|type=CDS|length=900bp|location=Sequence derived from alignment at OGUI01000006.1:5448..5843- (Aspergillus niger N402)
ATATAATCCTACTGAAAGAGACCGAGCGAAGAACCAAATATGATGACGCC
ATGGATCAGCTTGGATGCAAGCGGTACTGTTGCCGCAGAATGATTATGAC
CCATGTCGATCTGATAGAGAAACTTCTGAGGTTGTCGGAGATCTCTGGGA
ACGTTATCTTCAACTTCTTGATGAGGGTATACCCGATGGATGATTATCCC
CGTCCGCTGTTTTTCTTGCGGCAAGATATAATCCTACTGAAAGAGACCGA
GCGAAGAACCAAATATGATGACGCCATGGATCAGCTTGGATGCAAGCGGT
ACTGTTGCCGCAGAATGATTATGACCCATGTCGATCTGATAGAGAAACTT
CTGAGGTTGTCGGAGATCTCTGGGAACGTTATCTTCAACTTCTTGATGAG
GGTATACCCGATGGATGATTATCCCCGTCCGCTGTTTTTCTTGCGGCAAG
ATATAATCCTACTGAAAGAGACCGAGCGAAGAACCAAATATGATGACGCC
ATGGATCAGCTTGGATGCAAGCGGTACTGTTGCCGCAGAATGATTATGAC
CCATGTCGATCTGATAGAGAAACTTCTGAGGTTGTCGGAGATCTCTGGGA
ACGTTATCTTCAACTTCTTGATGAGGGTATACCCGATGGATGATTATCCC
CGTCCGCTGTTTTTCTTGCGGCAAGATATAATCCTACTGAAAGAGACCGA
GCGAAGAACCAAATATGATGACGCCATGGATCAGCTTGGATGCAAGCGGT
ACTGTTGCCGCAGAATGATTATGACCCATGTCGATCTGATAGAGAAACTT
CTGAGGTTGTCGGAGATCTCTGGGAACGTTATCTTCAACTTCTTGATGAG
GGTATACCCGATGGATGATTATCCCCGTCCGCTGTTTTTCTTGCGGCAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPB10ATCC64974_39030Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_39030-T1ATCC64974_39030-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_39030-T1.cdsATCC64974_39030-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_39030-T1.exon4ATCC64974_39030-T1.exon4Aspergillus niger N402exon
ATCC64974_39030-T1.exon3ATCC64974_39030-T1.exon3Aspergillus niger N402exon
ATCC64974_39030-T1.exon2ATCC64974_39030-T1.exon2Aspergillus niger N402exon
ATCC64974_39030-T1.exon1ATCC64974_39030-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR023580
DBxrefInterPro:IPR020789
DBxrefInterPro:IPR000268
DBxrefPFAM:PF01194
ProductDNA-directed RNA Polymerase II subunit L
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000006.1supercontigOGUI01000006.1:5448..5843 -
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