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ATCC64974_48800-T1, ATCC64974_48800-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_48800-T1
Unique NameATCC64974_48800-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:1773467..1774613-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_48800-T1 ID=ATCC64974_48800-T1|Name=ATCC64974_48800-T1|organism=Aspergillus niger N402|type=mRNA|length=1147bp|location=Sequence derived from alignment at OGUI01000007.1:1773467..1774613- (Aspergillus niger N402)
ATGTCTGCGAGAGGGTGAGTTGTTTCTTTTCGTTGTTGGAGACGTGTGGG
AAAGCGAGACAGAGAAAGAGAGGAAGAAATCCGGACCGGAGATATTGAAA
TGCTGCGGGAAAGAGATGAGATGAGAAGGGATGGAATGGAATATTCGCTG
GCTGGAGATTTCGACTCGAAATTACGGTTGGATTGAGTTCGATATGCGAC
ATACGAGATTGAAAGAGGAGGGTTGAATGAAGGTCCGGGAAAGAGATGGA
TAAATCTATGTGGATGGGAATTTGATATACATGGGATACGAGGGAATTAA
AGCTAACAAAATATCTATAACAGACGCGGTGGTGCCTCCGGCAACAAGCT
CAAGATGACCCTCGGTCTGCCTTGGTATGTCAACTCCAAATTTCTTCCGT
TCAAATCCATACACCCATCTTCGAGAGAATTATGCGATTCGATACAATTA
AATCAAATCAAATCGATCTCAATTATTCTTCAATCGAAACATACACCCAC
CACACACAAGCCACCTCGATATCTTCCCACCCAACACCCATGATTTCACA
ACCTACAACCGACACGAACACATGAAGAGAAAAATGATGAACACAGCTAA
TTAATCTTTTTGCCTACAGCGGCGCCGTGCTCAACTGCTGCGACAACTCC
GGTGCCCGCAACCTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCT
GAACCGTCTCCCCGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCA
AGAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTC
CGTCAGAGCAAGCCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGA
GGACAACGCTGGTGTTGTACGTACCCTTGTCCCCGAATTCCAATTCCACT
CTTTATATCAAGTGGATGAGGGTCATATGCGACAATAATGATGGAAATAC
TAATGATCGGTATAGATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGC
TATCACTGGTCCCGTTGGTAAGGAGGCTGCTGAGCTTTGGCCTGTAAGTT
CTCCCTAGCATACCTCAACGGGTATATATCAATGGGGAGATTCATATGCT
AATTGTGTGTCCAGCGTATTGCCTCCAACTCCGGTGTTGTCATGTAA
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Coding sequence (CDS) from alignment at OGUI01000007.1:1773467..1774613-

>ATCC64974_48800-T1 ID=ATCC64974_48800-T1|Name=ATCC64974_48800-T1|organism=Aspergillus niger N402|type=CDS|length=2115bp|location=Sequence derived from alignment at OGUI01000007.1:1773467..1774613- (Aspergillus niger N402)
CGTATTGCCTCCAACTCCGGTGTTGTCATGTAAATCGTCAACGCCAAGGG
TGAGATGAAGGGTTCCGCTATCACTGGTCCCGTTGGTAAGGAGGCTGCTG
AGCTTTGGCCTCGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCCG
CAACCTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGTC
TCCCCGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGGA
AAGCCTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGAG
CAAGCCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGAGGACAACG
CTGGTGTTACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATGACCCTCGG
TCTGCCTTGATGTCTGCGAGAGGCGTATTGCCTCCAACTCCGGTGTTGTC
ATGTAAATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACTGG
TCCCGTTGGTAAGGAGGCTGCTGAGCTTTGGCCTCGGCGCCGTGCTCAAC
TGCTGCGACAACTCCGGTGCCCGCAACCTGTACATCATCTCCGTCAAGGG
TATCGGTGCTCGCCTGAACCGTCTCCCCGCTGCCGGTGTCGGTGACATGG
TCATGGCCACCGTCAAGAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATG
CCCGCTGTTGTTGTCCGTCAGAGCAAGCCCTGGAGACGCCCCGACGGTAT
CTACCTCTACTTCGAGGACAACGCTGGTGTTACGCGGTGGTGCCTCCGGC
AACAAGCTCAAGATGACCCTCGGTCTGCCTTGATGTCTGCGAGAGGCGTA
TTGCCTCCAACTCCGGTGTTGTCATGTAAATCGTCAACGCCAAGGGTGAG
ATGAAGGGTTCCGCTATCACTGGTCCCGTTGGTAAGGAGGCTGCTGAGCT
TTGGCCTCGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCCGCAAC
CTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGTCTCCC
CGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGGAAAGC
CTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGAGCAAG
CCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGAGGACAACGCTGG
TGTTACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATGACCCTCGGTCTG
CCTTGATGTCTGCGAGAGGCGTATTGCCTCCAACTCCGGTGTTGTCATGT
AAATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACTGGTCCC
GTTGGTAAGGAGGCTGCTGAGCTTTGGCCTCGGCGCCGTGCTCAACTGCT
GCGACAACTCCGGTGCCCGCAACCTGTACATCATCTCCGTCAAGGGTATC
GGTGCTCGCCTGAACCGTCTCCCCGCTGCCGGTGTCGGTGACATGGTCAT
GGCCACCGTCAAGAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATGCCCG
CTGTTGTTGTCCGTCAGAGCAAGCCCTGGAGACGCCCCGACGGTATCTAC
CTCTACTTCGAGGACAACGCTGGTGTTACGCGGTGGTGCCTCCGGCAACA
AGCTCAAGATGACCCTCGGTCTGCCTTGATGTCTGCGAGAGGCGTATTGC
CTCCAACTCCGGTGTTGTCATGTAAATCGTCAACGCCAAGGGTGAGATGA
AGGGTTCCGCTATCACTGGTCCCGTTGGTAAGGAGGCTGCTGAGCTTTGG
CCTCGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCCGCAACCTGT
ACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGTCTCCCCGCT
GCCGGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCCTGA
GCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGAGCAAGCCCT
GGAGACGCCCCGACGGTATCTACCTCTACTTCGAGGACAACGCTGGTGTT
ACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATGACCCTCGGTCTGCCTT
GATGTCTGCGAGAGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL23ATCC64974_48800Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_48800-T1ATCC64974_48800-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_48800-T1.cdsATCC64974_48800-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_48800-T1.exon5ATCC64974_48800-T1.exon5Aspergillus niger N402exon
ATCC64974_48800-T1.exon4ATCC64974_48800-T1.exon4Aspergillus niger N402exon
ATCC64974_48800-T1.exon3ATCC64974_48800-T1.exon3Aspergillus niger N402exon
ATCC64974_48800-T1.exon2ATCC64974_48800-T1.exon2Aspergillus niger N402exon
ATCC64974_48800-T1.exon1ATCC64974_48800-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09265CQO
DBxrefInterPro:IPR019972
DBxrefInterPro:IPR036853
DBxrefInterPro:IPR000218
DBxrefPFAM:PF00238
Product60S ribosomal protein L23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:1773467..1774613 -
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