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Sequences
The following sequences are available for this feature:
mRNA from alignment at OGUI01000001.1:1637038..1637556- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC64974_5370-T1 ID=ATCC64974_5370-T1|Name=ATCC64974_5370-T1|organism=Aspergillus niger N402|type=mRNA|length=519bp|location=Sequence derived from alignment at OGUI01000001.1:1637038..1637556- (Aspergillus niger N402)
ATGGCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGA
TCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCG
ATCGCGAGCTCAAGGGTCGTCTCCATGTGAGTCTTACGCCGACCTCCGAC
TTCTGACTACGTGGCGTTTTACTGACATATGGTCTGTGGTAGGCATACGA
TAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGACCATCTACGTGG
TGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAGTACGTCGCTCTATC
CATCTACCTCGGTTATAGTACAACCAGTTAGGGGGGAGGCTATATTAGTG
CGGTGCTGGGCTAACGCAGAATGATCGTCTTTAGACCATCAAGAAGCAAG
AAGAGATGCTCTTCGTTCGAGGTGCGTTTTGTGATGCCGTTCCCGGCAGA
GCCCGGGGCTTGTCATACTGACCTTTCGTAATAGGAGACTCCGTCGTTCT
GATTTCGCCTCAGGCATAA back to topCoding sequence (CDS) from alignment at OGUI01000001.1:1637038..1637556- >ATCC64974_5370-T1 ID=ATCC64974_5370-T1|Name=ATCC64974_5370-T1|organism=Aspergillus niger N402|type=CDS|length=1164bp|location=Sequence derived from alignment at OGUI01000001.1:1637038..1637556- (Aspergillus niger N402)
GAGACTCCGTCGTTCTGATTTCGCCTCAGGCATAAACCATCAAGAAGCAA
GAAGAGATGCTCTTCGTTCGAGGCATACGATAGCCATTGCAACCTGGTGC
TAGGAGATGTTGAGGAGACCATCTACGTGGTGGAGGAAGACGAGAACGAG
CAAGAGACCCTCCGAATGGCCGACACCGAGGATGCGGGCACATCGTCCGT
CTCCGAACCCTTAGATCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTG
TCAAACTGCGCGGCGATCGCGAGCTCAAGGGTCGTCTCCATGAGACTCCG
TCGTTCTGATTTCGCCTCAGGCATAAACCATCAAGAAGCAAGAAGAGATG
CTCTTCGTTCGAGGCATACGATAGCCATTGCAACCTGGTGCTAGGAGATG
TTGAGGAGACCATCTACGTGGTGGAGGAAGACGAGAACGAGCAAGAGACC
CTCCGAATGGCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACC
CTTAGATCTGGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGC
GCGGCGATCGCGAGCTCAAGGGTCGTCTCCATGAGACTCCGTCGTTCTGA
TTTCGCCTCAGGCATAAACCATCAAGAAGCAAGAAGAGATGCTCTTCGTT
CGAGGCATACGATAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGA
CCATCTACGTGGTGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAATG
GCCGACACCGAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGATCT
GGTGCGCCTGTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCGATC
GCGAGCTCAAGGGTCGTCTCCATGAGACTCCGTCGTTCTGATTTCGCCTC
AGGCATAAACCATCAAGAAGCAAGAAGAGATGCTCTTCGTTCGAGGCATA
CGATAGCCATTGCAACCTGGTGCTAGGAGATGTTGAGGAGACCATCTACG
TGGTGGAGGAAGACGAGAACGAGCAAGAGACCCTCCGAATGGCCGACACC
GAGGATGCGGGCACATCGTCCGTCTCCGAACCCTTAGATCTGGTGCGCCT
GTCGCTCGATGAAATCGTCTTTGTCAAACTGCGCGGCGATCGCGAGCTCA
AGGGTCGTCTCCAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0000956 | nuclear-transcribed mRNA catabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| ATCC64974_5370-T1 | ATCC64974_5370-T1-protein | Aspergillus niger N402 | polypeptide |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034105 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | U4/U6-U5 snRNP complex subunit lsm3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| OGUI01000001.1 | supercontig | OGUI01000001.1:1637038..1637556 - |
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