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ATCC64974_55090-T1, ATCC64974_55090-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_55090-T1
Unique NameATCC64974_55090-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000007.1:3894954..3895921-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_55090-T1 ID=ATCC64974_55090-T1|Name=ATCC64974_55090-T1|organism=Aspergillus niger N402|type=mRNA|length=968bp|location=Sequence derived from alignment at OGUI01000007.1:3894954..3895921- (Aspergillus niger N402)
ATGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACAT
TGAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGT
CTCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTC
ATCAACATTGGCAAGACCTGGTATGTTGATCAGGCGATATATTGCGCGCA
ACTCATTTAGGATCGCTGCCTAACACCGCGCGAAAACTTAGGGAGAAGAT
CCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGGCCGACATCT
GTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTGAAGTTCGCC
TCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCCCGGTAACTT
CACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGATCATCGTCA
CCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGCTACGTCAAC
ATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGACTTCGTTGA
CGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCGGTCTCGTCT
GGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACCCTCGCTTCC
CGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTACCGTGACCC
CGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTGCCAGCGCTG
AGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGTGAGAACTGG
GATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTTCGCTGCTGC
TAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTGGCGACTGGG
CTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAGGCCCAGCCC
ACCGAGGCTAAGTGGTAA
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Coding sequence (CDS) from alignment at OGUI01000007.1:3894954..3895921-

>ATCC64974_55090-T1 ID=ATCC64974_55090-T1|Name=ATCC64974_55090-T1|organism=Aspergillus niger N402|type=CDS|length=1794bp|location=Sequence derived from alignment at OGUI01000007.1:3894954..3895921- (Aspergillus niger N402)
GGAGAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGG
CCGACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTG
AAGTTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCC
CGGTAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGA
TCATCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGC
TACGTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGA
CTTCGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCG
GTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACC
CTCGCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTA
CCGTGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTG
CCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGT
GAGAACTGGGATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTT
CGCTGCTGCTAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTG
GCGACTGGGCTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAG
GCCCAGCCCACCGAGGCTAAGTGGTAAATGGCCCCCTCTCAGCTCCCCCC
GATCTTCAACCCCACCTCCCAGGACATTGAGATGCTCCTCGCAGCTCAGT
GCCACCTCGGGTCCAAGAACCTCCAGTCTCACATGGAGCCTTACCTCTGG
AAGACTCGCCCCGACGGTGTCAATGTCATCAACATTGGCAAGACCTGGGA
GAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGGCCG
ACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTGAAG
TTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCCCGG
TAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGATCA
TCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGCTAC
GTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGACTT
CGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCGGTC
TCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACCCTC
GCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTACCG
TGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTGCCA
GCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGTGAG
AACTGGGATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTTCGC
TGCTGCTAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTGGCG
ACTGGGCTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAGGCC
CAGCCCACCGAGGCTAAGTGGTAAATGGCCCCCTCTCAGCTCCCCCCGAT
CTTCAACCCCACCTCCCAGGACATTGAGATGCTCCTCGCAGCTCAGTGCC
ACCTCGGGTCCAAGAACCTCCAGTCTCACATGGAGCCTTACCTCTGGAAG
ACTCGCCCCGACGGTGTCAATGTCATCAACATTGGCAAGACCTG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS0ATCC64974_55090Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_55090-T1ATCC64974_55090-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_55090-T1.cdsATCC64974_55090-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_55090-T1.exon2ATCC64974_55090-T1.exon2Aspergillus niger N402exon
ATCC64974_55090-T1.exon1ATCC64974_55090-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR023591
DBxrefInterPro:IPR027498
DBxrefInterPro:IPR018130
DBxrefInterPro:IPR032281
DBxrefInterPro:IPR005707
DBxrefInterPro:IPR001865
DBxrefPFAM:PF16122
Productstructural constituent of ribosome
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000007.1supercontigOGUI01000007.1:3894954..3895921 -
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