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ATCC64974_64910-T1, ATCC64974_64910-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_64910-T1
Unique NameATCC64974_64910-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000010.1:535542..536173+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_64910-T1 ID=ATCC64974_64910-T1|Name=ATCC64974_64910-T1|organism=Aspergillus niger N402|type=mRNA|length=632bp|location=Sequence derived from alignment at OGUI01000010.1:535542..536173+ (Aspergillus niger N402)
ATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCAT
GGTGTGCTCCCTTGTCCAACTGCACAGCGTACGTTCAGCTGCTACCTCCC
AATTAAAACCAACCCAACCCAACCCGAACAACTAACATTTTCTCCTTCCT
TACTGCTTAGAAATTCATGCGCGAAGGCTGTCCCAACTGCGACAACGTCC
TCGGCCTCCGCGGCAACAACGACGCGATCCAAGAATGCACGTCGCAGGTC
TTCGAGGGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGGTGGCTAG
GTGGCAGAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTTAAGGTTA
CGGGATCGGTGAGTACTCTCGCCCACCCATACTGAACTTCAATTATGTCC
GGGGGTGGTGGTGAAGAGAATATTGGGCTAACGGTGATGGGTGAACAGCT
TCCCGATGAGATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTATATTC
CGTATGTTGCCCTTCTATTCCTTCTTTGCATGTCTTTGCATTGTGTGTTG
CGTGTTGGATTAATTGATGAGTGCTGATTATTATGTGTCTCGATACAGGA
GGGATGGTAGCACGGGTGAAGAGGAGGCGTGA
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Coding sequence (CDS) from alignment at OGUI01000010.1:535542..536173+

>ATCC64974_64910-T1 ID=ATCC64974_64910-T1|Name=ATCC64974_64910-T1|organism=Aspergillus niger N402|type=CDS|length=1452bp|location=Sequence derived from alignment at OGUI01000010.1:535542..536173+ (Aspergillus niger N402)
ATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCAT
GGTGTGCTCCCTTGTCCAACTGCACAGCAAATTCATGCGCGAAGGCTGTC
CCAACTGCGACAACGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAA
GAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCAC
AACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGA
CGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGT
TTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGA
AGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTC
TGCGCGCCTGCATGGTGTGCTCCCTTGTCCAACTGCACAGCAAATTCATG
CGCGAAGGCTGTCCCAACTGCGACAACGTCCTCGGCCTCCGCGGCAACAA
CGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGC
TCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGT
TATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGA
GATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATG
GTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCAAGC
CAGCAGCGCACTCTGCGCGCCTGCATGGTGTGCTCCCTTGTCCAACTGCA
CAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGACAACGTCCTCGGCC
TCCGCGGCAACAACGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAG
GGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCA
GAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGAT
CGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTAT
ATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTA
CGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCATGGTGTGCTCCC
TTGTCCAACTGCACAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGAC
AACGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAAGAATGCACGTC
GCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGG
TGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTT
AAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTC
GGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGT
GA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0032786positive regulation of DNA-templated transcription, elongation
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPT4ATCC64974_64910Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_64910-T1.exon1ATCC64974_64910-T1.exon1Aspergillus niger N402exon
ATCC64974_64910-T1.exon2ATCC64974_64910-T1.exon2Aspergillus niger N402exon
ATCC64974_64910-T1.exon3ATCC64974_64910-T1.exon3Aspergillus niger N402exon
ATCC64974_64910-T1.exon4ATCC64974_64910-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_64910-T1.cdsATCC64974_64910-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_64910-T1ATCC64974_64910-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265BBJ
DBxrefInterPro:IPR029040
DBxrefInterPro:IPR038510
DBxrefInterPro:IPR009287
DBxrefInterPro:IPR022800
DBxrefPFAM:PF06093
Producttranscription elongation factor spt4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000010.1supercontigOGUI01000010.1:535542..536173 +
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