You are here

Home

ATCC64974_65590-T1, ATCC64974_65590-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_65590-T1
Unique NameATCC64974_65590-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000010.1:783530..784139+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_65590-T1 ID=ATCC64974_65590-T1|Name=ATCC64974_65590-T1|organism=Aspergillus niger N402|type=mRNA|length=610bp|location=Sequence derived from alignment at OGUI01000010.1:783530..784139+ (Aspergillus niger N402)
ATGACAGGCAGCAAATCATCACGACCGACTTCCGAGACATCTGCTCCGGG
TCTCCCCGCAACATTAGGCCAAACTGCGCGCGCCACGGACGACGATGCCA
AGCTCATCTTCGGTACTGTTTTCTCCCTGCGCAACATGGTTCGCAAGCTA
GGAGGCGAGGACGACAAGTAAGGACTCCACCCTACAGCGACGAGGCAACT
CAACTGGGAGGACAGTCATTGACCGCTCCGCCACGTTTATAGCTTCGTTA
CCTACCGCACTAGCCAATACAAGCTCCATTACTACGAAACGCCGACCAAT
ATCAAGTTCGTTATGCTGACGGACCTCAAGAGTCCAAGCATGCGCGTTGC
TTTGCAGCAGATCTATATCAATCTATACGTCGAATACGGTACGCTCTGGC
TAGTTTAAACGATAACCTCCTCTACAGCTGTATGCTGACCACCTCTACTT
CTAGTGGTCAAGAACCCGTTATCTCCCGCCGAGCATCCAGGTGGCATTGG
AGTGAACAATGAGCTCTTTGAAGAGTCTCTGGAACAGTTTGTGGTATGTG
CCATCAACGTCTCCTAGGCGGATGTAATCTAACCTACAGCAGACTCGTGT
TCTATCGTGA
back to top

Coding sequence (CDS) from alignment at OGUI01000010.1:783530..784139+

>ATCC64974_65590-T1 ID=ATCC64974_65590-T1|Name=ATCC64974_65590-T1|organism=Aspergillus niger N402|type=CDS|length=1680bp|location=Sequence derived from alignment at OGUI01000010.1:783530..784139+ (Aspergillus niger N402)
ATGACAGGCAGCAAATCATCACGACCGACTTCCGAGACATCTGCTCCGGG
TCTCCCCGCAACATTAGGCCAAACTGCGCGCGCCACGGACGACGATGCCA
AGCTCATCTTCGGTACTGTTTTCTCCCTGCGCAACATGGTTCGCAAGCTA
GGAGGCGAGGACGACAACTTCGTTACCTACCGCACTAGCCAATACAAGCT
CCATTACTACGAAACGCCGACCAATATCAAGTTCGTTATGCTGACGGACC
TCAAGAGTCCAAGCATGCGCGTTGCTTTGCAGCAGATCTATATCAATCTA
TACGTCGAATACGTGGTCAAGAACCCGTTATCTCCCGCCGAGCATCCAGG
TGGCATTGGAGTGAACAATGAGCTCTTTGAAGAGTCTCTGGAACAGTTTG
TGACTCGTGTTCTATCGTGAATGACAGGCAGCAAATCATCACGACCGACT
TCCGAGACATCTGCTCCGGGTCTCCCCGCAACATTAGGCCAAACTGCGCG
CGCCACGGACGACGATGCCAAGCTCATCTTCGGTACTGTTTTCTCCCTGC
GCAACATGGTTCGCAAGCTAGGAGGCGAGGACGACAACTTCGTTACCTAC
CGCACTAGCCAATACAAGCTCCATTACTACGAAACGCCGACCAATATCAA
GTTCGTTATGCTGACGGACCTCAAGAGTCCAAGCATGCGCGTTGCTTTGC
AGCAGATCTATATCAATCTATACGTCGAATACGTGGTCAAGAACCCGTTA
TCTCCCGCCGAGCATCCAGGTGGCATTGGAGTGAACAATGAGCTCTTTGA
AGAGTCTCTGGAACAGTTTGTGACTCGTGTTCTATCGTGAATGACAGGCA
GCAAATCATCACGACCGACTTCCGAGACATCTGCTCCGGGTCTCCCCGCA
ACATTAGGCCAAACTGCGCGCGCCACGGACGACGATGCCAAGCTCATCTT
CGGTACTGTTTTCTCCCTGCGCAACATGGTTCGCAAGCTAGGAGGCGAGG
ACGACAACTTCGTTACCTACCGCACTAGCCAATACAAGCTCCATTACTAC
GAAACGCCGACCAATATCAAGTTCGTTATGCTGACGGACCTCAAGAGTCC
AAGCATGCGCGTTGCTTTGCAGCAGATCTATATCAATCTATACGTCGAAT
ACGTGGTCAAGAACCCGTTATCTCCCGCCGAGCATCCAGGTGGCATTGGA
GTGAACAATGAGCTCTTTGAAGAGTCTCTGGAACAGTTTGTGACTCGTGT
TCTATCGTGAATGACAGGCAGCAAATCATCACGACCGACTTCCGAGACAT
CTGCTCCGGGTCTCCCCGCAACATTAGGCCAAACTGCGCGCGCCACGGAC
GACGATGCCAAGCTCATCTTCGGTACTGTTTTCTCCCTGCGCAACATGGT
TCGCAAGCTAGGAGGCGAGGACGACAACTTCGTTACCTACCGCACTAGCC
AATACAAGCTCCATTACTACGAAACGCCGACCAATATCAAGTTCGTTATG
CTGACGGACCTCAAGAGTCCAAGCATGCGCGTTGCTTTGCAGCAGATCTA
TATCAATCTATACGTCGAATACGTGGTCAAGAACCCGTTATCTCCCGCCG
AGCATCCAGGTGGCATTGGAGTGAACAATGAGCTCTTTGAAGAGTCTCTG
GAACAGTTTGTGACTCGTGTTCTATCGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_65590ATCC64974_65590Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65590-T1.exon1ATCC64974_65590-T1.exon1Aspergillus niger N402exon
ATCC64974_65590-T1.exon2ATCC64974_65590-T1.exon2Aspergillus niger N402exon
ATCC64974_65590-T1.exon3ATCC64974_65590-T1.exon3Aspergillus niger N402exon
ATCC64974_65590-T1.exon4ATCC64974_65590-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65590-T1.cdsATCC64974_65590-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65590-T1ATCC64974_65590-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR011012
DBxrefInterPro:IPR007233
DBxrefPFAM:PF04099
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000010.1supercontigOGUI01000010.1:783530..784139 +
Powered by Drupal