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ATCC64974_65900-T1, ATCC64974_65900-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_65900-T1
Unique NameATCC64974_65900-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000010.1:879402..880276+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_65900-T1 ID=ATCC64974_65900-T1|Name=ATCC64974_65900-T1|organism=Aspergillus niger N402|type=mRNA|length=875bp|location=Sequence derived from alignment at OGUI01000010.1:879402..880276+ (Aspergillus niger N402)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGTAGGTACAATTTATGCGATTC
ATCCGTCTTCTTGAAATTTGCAGATTTGTTCTTGTCGAAAACCCGGTTTT
GTGATCCTCGAATGGCATCTACATGTGGCGGTACTTCGGGGGATAAGGCC
CTCTCAGCACGAACGAAAAAAAGGCATTCCCGATGAACGATTCGAGCCCT
GTGTTTCCCCCGTTATTGTCAACTTGCATGGATTTTATTTCGAGCGAGCG
ATGGGCTATATTTTATTTTGAAGTGACGGACGGGCTGACATTCTGGATCT
ATAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGT
CATTAAGGGTGCTGGCGTACGTTCTCACAAGGCTTCAAATCCGCCCATGC
TCTGTTCGGTGCTAAATGTCATATAATTTTTCCAGGCGCACAAGGCTCGT
AAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTC
CCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCG
ATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAG
AAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAA
CAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCG
TCAAGGTCAACACTCTCGTCAGGTACGACGACCTATCCCATAATCATTGA
TGTACTACAGAAGTCGGAATATCTAACCTTCCTTTAGGCCCGATGGACTG
AAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGC
TGCCACCAAGCTTGCCATCGTCTAG
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Coding sequence (CDS) from alignment at OGUI01000010.1:879402..880276+

>ATCC64974_65900-T1 ID=ATCC64974_65900-T1|Name=ATCC64974_65900-T1|organism=Aspergillus niger N402|type=CDS|length=1860bp|location=Sequence derived from alignment at OGUI01000010.1:879402..880276+ (Aspergillus niger N402)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAA
GGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGCGCACAAGG
CTCGTAAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAG
CTTTCCCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCG
CCTCGATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCA
TGAAGAAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAG
TCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGA
CACCGTCAAGGTCAACACTCTCGTCAGGCCCGATGGACTGAAGAAGGCCT
TCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAAG
CTTGCCATCGTCTAGATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGAC
CAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTG
CTGGCGCGCACAAGGCTCGTAAGGTCCGCACCTCTACGACCTTCCACCGC
CCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTACCCCCGCAAGTCGAT
CCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCATCCTCTACCCTCTCA
ACACCGAGAGCGCCATGAAGAAGATCGAGGAGAACAACACCCTGGTCTTC
ATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAA
GCTGTATGACGTTGACACCGTCAAGGTCAACACTCTCGTCAGGCCCGATG
GACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGAC
ATCGCTGCCACCAAGCTTGCCATCGTCTAGATGGCTCCCAAGGTGGAAAA
CAAGCAAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGG
CAGTCATTAAGGGTGCTGGCGCGCACAAGGCTCGTAAGGTCCGCACCTCT
ACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTA
CCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCA
TCCTCTACCCTCTCAACACCGAGAGCGCCATGAAGAAGATCGAGGAGAAC
AACACCCTGGTCTTCATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAA
GCTCGCCCTCAAGAAGCTGTATGACGTTGACACCGTCAAGGTCAACACTC
TCGTCAGGCCCGATGGACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGAC
GTTGATGCTCTGGACATCGCTGCCACCAAGCTTGCCATCGTCTAGATGGC
TCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAAGGCTG
GTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGCGCACAAGGCTCGT
AAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTC
CCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCG
ATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAG
AAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAA
CAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCG
TCAAGGTCAACACTCTCGTCAGGCCCGATGGACTGAAGAAGGCCTTCGCC
CGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAAGCTTGC
CATCGTCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL23AATCC64974_65900Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65900-T1.exon1ATCC64974_65900-T1.exon1Aspergillus niger N402exon
ATCC64974_65900-T1.exon2ATCC64974_65900-T1.exon2Aspergillus niger N402exon
ATCC64974_65900-T1.exon3ATCC64974_65900-T1.exon3Aspergillus niger N402exon
ATCC64974_65900-T1.exon4ATCC64974_65900-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65900-T1.cdsATCC64974_65900-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_65900-T1ATCC64974_65900-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092657YR
DBxrefInterPro:IPR012678
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR005633
DBxrefInterPro:IPR013025
DBxrefPFAM:PF03939
DBxrefPFAM:PF00276
Product60S ribosomal protein L23A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000010.1supercontigOGUI01000010.1:879402..880276 +
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