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ATCC64974_77840-T1, ATCC64974_77840-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_77840-T1
Unique NameATCC64974_77840-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000013.1:1390805..1391626-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_77840-T1 ID=ATCC64974_77840-T1|Name=ATCC64974_77840-T1|organism=Aspergillus niger N402|type=mRNA|length=822bp|location=Sequence derived from alignment at OGUI01000013.1:1390805..1391626- (Aspergillus niger N402)
ATGGTATGTGTGCTGCGTGACCCTCACCTCTCCCTCGAACCAACCTAGCT
GACAGACCTCCTCCACAGAGTTCCCCTTTCGATATCAGTATGTACTAGCT
TCGCACAGCTTACCATCATGATTATTAACTCTCGGATGAACAGATGGCGG
TGCCTGCGTCGCCATGGTGGGCAAGGACTGCGTCGCAATCGCCTGTGATC
TCCGGTTGGGTATGCAGGCCCTGACTGTCTCCAACAACTTCCCCAAGATC
TTCAACTACGGCCCCTCCACCTTCCTCGGTCTGACCGGCCTGGCCACCGA
CGTGTCGACTGTGTCCGACCTTTTCCGGTACAAGGTTAATATGTACCGCC
TCCGCGAGGAACGGAACATTGCCCCCCAGACTCTCGCCAACCTGGTCAGT
TCGTCGTTATACGAGAAACGGTTCGGTCCTTTCTTCGTCAGCCCCGTCAT
TGCCGGAATCAACAGCACAACGGGGAAGCCTTTCATCTGCGGATTTGACA
GTATCGGGTGTATCGATTTTGCGAAGGACTTCATTGTTAGCGGAACTGCC
AGTGAGCAGCTGTTTGGTACCTGCGAGGGTCTGTGGGAGCCGGACTTGGT
AAGACTACTCCCTTTTGGAGAAAAAAAAAATAAATGAAGATGGTGATGTA
TCGAGTCTGTACTAACATTCTGATGTAGTCCCCCGAGGACCTGTTCGAGA
CCATCTCGCAAGCCTTGCTCAGCGCCGTCGATCGAGACGCCCTTTCCGGT
TGGGGTGCACAGGTGTATATCATAGAAAAGGACAAGGTGACCAAGCGTCT
ACTGAAGGGAAGGCAAGATTAG
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Coding sequence (CDS) from alignment at OGUI01000013.1:1390805..1391626-

>ATCC64974_77840-T1 ID=ATCC64974_77840-T1|Name=ATCC64974_77840-T1|organism=Aspergillus niger N402|type=CDS|length=2484bp|location=Sequence derived from alignment at OGUI01000013.1:1390805..1391626- (Aspergillus niger N402)
TCCCCCGAGGACCTGTTCGAGACCATCTCGCAAGCCTTGCTCAGCGCCGT
CGATCGAGACGCCCTTTCCGGTTGGGGTGCACAGGTGTATATCATAGAAA
AGGACAAGGTGACCAAGCGTCTACTGAAGGGAAGGCAAGATTAGATGGCG
GTGCCTGCGTCGCCATGGTGGGCAAGGACTGCGTCGCAATCGCCTGTGAT
CTCCGGTTGGGTATGCAGGCCCTGACTGTCTCCAACAACTTCCCCAAGAT
CTTCAACTACGGCCCCTCCACCTTCCTCGGTCTGACCGGCCTGGCCACCG
ACGTGTCGACTGTGTCCGACCTTTTCCGGTACAAGGTTAATATGTACCGC
CTCCGCGAGGAACGGAACATTGCCCCCCAGACTCTCGCCAACCTGGTCAG
TTCGTCGTTATACGAGAAACGGTTCGGTCCTTTCTTCGTCAGCCCCGTCA
TTGCCGGAATCAACAGCACAACGGGGAAGCCTTTCATCTGCGGATTTGAC
AGTATCGGGTGTATCGATTTTGCGAAGGACTTCATTGTTAGCGGAACTGC
CAGTGAGCAGCTGTTTGGTACCTGCGAGGGTCTGTGGGAGCCGGACTTGA
GTTCCCCTTTCGATATCAATGTCCCCCGAGGACCTGTTCGAGACCATCTC
GCAAGCCTTGCTCAGCGCCGTCGATCGAGACGCCCTTTCCGGTTGGGGTG
CACAGGTGTATATCATAGAAAAGGACAAGGTGACCAAGCGTCTACTGAAG
GGAAGGCAAGATTAGATGGCGGTGCCTGCGTCGCCATGGTGGGCAAGGAC
TGCGTCGCAATCGCCTGTGATCTCCGGTTGGGTATGCAGGCCCTGACTGT
CTCCAACAACTTCCCCAAGATCTTCAACTACGGCCCCTCCACCTTCCTCG
GTCTGACCGGCCTGGCCACCGACGTGTCGACTGTGTCCGACCTTTTCCGG
TACAAGGTTAATATGTACCGCCTCCGCGAGGAACGGAACATTGCCCCCCA
GACTCTCGCCAACCTGGTCAGTTCGTCGTTATACGAGAAACGGTTCGGTC
CTTTCTTCGTCAGCCCCGTCATTGCCGGAATCAACAGCACAACGGGGAAG
CCTTTCATCTGCGGATTTGACAGTATCGGGTGTATCGATTTTGCGAAGGA
CTTCATTGTTAGCGGAACTGCCAGTGAGCAGCTGTTTGGTACCTGCGAGG
GTCTGTGGGAGCCGGACTTGAGTTCCCCTTTCGATATCAATGTCCCCCGA
GGACCTGTTCGAGACCATCTCGCAAGCCTTGCTCAGCGCCGTCGATCGAG
ACGCCCTTTCCGGTTGGGGTGCACAGGTGTATATCATAGAAAAGGACAAG
GTGACCAAGCGTCTACTGAAGGGAAGGCAAGATTAGATGGCGGTGCCTGC
GTCGCCATGGTGGGCAAGGACTGCGTCGCAATCGCCTGTGATCTCCGGTT
GGGTATGCAGGCCCTGACTGTCTCCAACAACTTCCCCAAGATCTTCAACT
ACGGCCCCTCCACCTTCCTCGGTCTGACCGGCCTGGCCACCGACGTGTCG
ACTGTGTCCGACCTTTTCCGGTACAAGGTTAATATGTACCGCCTCCGCGA
GGAACGGAACATTGCCCCCCAGACTCTCGCCAACCTGGTCAGTTCGTCGT
TATACGAGAAACGGTTCGGTCCTTTCTTCGTCAGCCCCGTCATTGCCGGA
ATCAACAGCACAACGGGGAAGCCTTTCATCTGCGGATTTGACAGTATCGG
GTGTATCGATTTTGCGAAGGACTTCATTGTTAGCGGAACTGCCAGTGAGC
AGCTGTTTGGTACCTGCGAGGGTCTGTGGGAGCCGGACTTGAGTTCCCCT
TTCGATATCAATGTCCCCCGAGGACCTGTTCGAGACCATCTCGCAAGCCT
TGCTCAGCGCCGTCGATCGAGACGCCCTTTCCGGTTGGGGTGCACAGGTG
TATATCATAGAAAAGGACAAGGTGACCAAGCGTCTACTGAAGGGAAGGCA
AGATTAGATGGCGGTGCCTGCGTCGCCATGGTGGGCAAGGACTGCGTCGC
AATCGCCTGTGATCTCCGGTTGGGTATGCAGGCCCTGACTGTCTCCAACA
ACTTCCCCAAGATCTTCAACTACGGCCCCTCCACCTTCCTCGGTCTGACC
GGCCTGGCCACCGACGTGTCGACTGTGTCCGACCTTTTCCGGTACAAGGT
TAATATGTACCGCCTCCGCGAGGAACGGAACATTGCCCCCCAGACTCTCG
CCAACCTGGTCAGTTCGTCGTTATACGAGAAACGGTTCGGTCCTTTCTTC
GTCAGCCCCGTCATTGCCGGAATCAACAGCACAACGGGGAAGCCTTTCAT
CTGCGGATTTGACAGTATCGGGTGTATCGATTTTGCGAAGGACTTCATTG
TTAGCGGAACTGCCAGTGAGCAGCTGTTTGGTACCTGCGAGGGTCTGTGG
GAGCCGGACTTGAGTTCCCCTTTCGATATCAATG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0019774proteasome core complex, beta-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PUP3ATCC64974_77840Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_77840-T1ATCC64974_77840-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_77840-T1.cdsATCC64974_77840-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_77840-T1.exon4ATCC64974_77840-T1.exon4Aspergillus niger N402exon
ATCC64974_77840-T1.exon3ATCC64974_77840-T1.exon3Aspergillus niger N402exon
ATCC64974_77840-T1.exon2ATCC64974_77840-T1.exon2Aspergillus niger N402exon
ATCC64974_77840-T1.exon1ATCC64974_77840-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteBUSCO:EOG09264G4X
NoteMEROPS:MER0001710
DBxrefInterPro:IPR033811
DBxrefInterPro:IPR023333
DBxrefInterPro:IPR016050
DBxrefInterPro:IPR029055
DBxrefInterPro:IPR001353
DBxrefPFAM:PF00227
Productproteasome core particle subunit beta 3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000013.1supercontigOGUI01000013.1:1390805..1391626 -
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