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ATCC64974_8180-T1, ATCC64974_8180-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_8180-T1
Unique NameATCC64974_8180-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000002.1:244382..244773-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_8180-T1 ID=ATCC64974_8180-T1|Name=ATCC64974_8180-T1|organism=Aspergillus niger N402|type=mRNA|length=392bp|location=Sequence derived from alignment at OGUI01000002.1:244382..244773- (Aspergillus niger N402)
ATGCATCTTATGTGTATGTTTCTCCGCACTCGGACTCCCCTCGATCAATC
CGAACTAACGAATGCACAAAGACTCTCTGGGCCCCGATGGCAAGCGGGTT
TACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTACCAAGAGTGCTCA
CCCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGGTAGGTTCTTTTCG
CCGACGATCTCCAGGCACATTGGAGAGAATTTGTGGACTAATGATATTGG
CTATTTAGGCACCGTGTGACCCTCAAGAAGAGATACGGTCTGCTTATGAC
CCAGCAAGCCGGTATGAAACCCCGAGTGCGAGTCCCCATATAGTGGATAT
GGCTGACGGCAGACTACAGACAAGGAGGCTGCTAAGCTGTAA
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Coding sequence (CDS) from alignment at OGUI01000002.1:244382..244773-

>ATCC64974_8180-T1 ID=ATCC64974_8180-T1|Name=ATCC64974_8180-T1|organism=Aspergillus niger N402|type=CDS|length=816bp|location=Sequence derived from alignment at OGUI01000002.1:244382..244773- (Aspergillus niger N402)
ACAAGGAGGCTGCTAAGCTGTAAGCACCGTGTGACCCTCAAGAAGAGATA
CGGTCTGCTTATGACCCAGCAAGCCGACTCTCTGGGCCCCGATGGCAAGC
GGGTTTACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTACCAAGAGT
GCTCACCCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGATGCATCTT
ATGTACAAGGAGGCTGCTAAGCTGTAAGCACCGTGTGACCCTCAAGAAGA
GATACGGTCTGCTTATGACCCAGCAAGCCGACTCTCTGGGCCCCGATGGC
AAGCGGGTTTACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTACCAA
GAGTGCTCACCCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGATGCA
TCTTATGTACAAGGAGGCTGCTAAGCTGTAAGCACCGTGTGACCCTCAAG
AAGAGATACGGTCTGCTTATGACCCAGCAAGCCGACTCTCTGGGCCCCGA
TGGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTA
CCAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGA
TGCATCTTATGTACAAGGAGGCTGCTAAGCTGTAAGCACCGTGTGACCCT
CAAGAAGAGATACGGTCTGCTTATGACCCAGCAAGCCGACTCTCTGGGCC
CCGATGGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGGACGGTCGC
GTTACCAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGACAAGTACTC
TCGATGCATCTTATGT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0030515snoRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NOP10ATCC64974_8180Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8180-T1ATCC64974_8180-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8180-T1.cdsATCC64974_8180-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_8180-T1.exon4ATCC64974_8180-T1.exon4Aspergillus niger N402exon
ATCC64974_8180-T1.exon3ATCC64974_8180-T1.exon3Aspergillus niger N402exon
ATCC64974_8180-T1.exon2ATCC64974_8180-T1.exon2Aspergillus niger N402exon
ATCC64974_8180-T1.exon1ATCC64974_8180-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
DBxrefInterPro:IPR036756
DBxrefInterPro:IPR007264
DBxrefPFAM:PF04135
ProductsnoRNP complex protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000002.1supercontigOGUI01000002.1:244382..244773 -
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