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ATCC64974_84300-T1, ATCC64974_84300-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_84300-T1
Unique NameATCC64974_84300-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000014.1:558455..561484-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_84300-T1 ID=ATCC64974_84300-T1|Name=ATCC64974_84300-T1|organism=Aspergillus niger N402|type=mRNA|length=3030bp|location=Sequence derived from alignment at OGUI01000014.1:558455..561484- (Aspergillus niger N402)
ATGAATGAGGAAGGGGCCAGCAATTATGAAATGTCACACTCCCGCAGTCA
ACCCTCACAACAAGAGTCAAATCTGGATGAGAAATACCCAAACCGTCCTC
ATAATCACTCCCAGACATTGCCCTTTCACGAGCTCTTTGAGACCCTCTTC
AATCCGTTGAGTGAGCTCTCCAAGAAGCCTGCAGGCACCGCCGCTCCTCG
GCGAAAAGTCGGGCCTCATGGCCAGTCGGCGGCGAACCTTACCCCACACG
AAAAGCGACGGGATGTCATTGAGCGGTTCATCTCACGATGGCGGAAAGAG
GTGGGGGATGATATCTACCCTGCGTTTCGGCTGATTCTTCCGGACAAAGA
TCGCGACCGGGCCATGTACGGTATCAAAGAAAAGGCCATCGGAAAGCTAC
TCGTCAAAATTATGAAGATCGACAAAAATTCGGATGACGGCTTCAATCTT
TTGAACTGGAAGCTGCCAGGCCAGTTGGCTACCTCGCGCTTTATGGCGGG
GGATTTTGCGAGACGCTGCTACGATGTTATCTCAAAACGGCCAATGAGGA
CAGAGGTGGGAAATATGTCCATTGAGGAGGTGAATGACAGGCTCGACCAG
CTTTCAAATGCCTCGAAGGAGGAGCAGCAGCTACCCATCTTGTCGGAGTT
TTACCGAAAAATGAACCCCGAGGAGCTGCTGTGGCTGATCCGCATTATCC
TTCGACAGATGAAAGTCGGGGCTACAGAGCGAACCTTATTCAATGTATGG
CACCCAGATGCTGCAAACCTCTATAGCATATCCAGTAGCCTTCAACGTGT
TTGTTGGGAGCTGCATGATCCGAACATTCGGCTTGGGGCTGAAAACAGCG
GCATTTCTCTGATGCAATGCTTCCAGCCCCAGCTAGCTCAGTTTCAGATG
CAGTCCCTTGATCGAATGATTGCCCGAATGCGGGGTACCGAAGAAGACCC
GGTATTCTGGATCGAGGAGAAGCTCGACGGGGAACGTATGCAGCTTCATA
TGGAGACTGACAGCTCGGTGCCGGGAGGAAAGAAGTTTCGCTTCTGGTCG
AGGAAAGCGAAGGATTACACCTATCTCTATGGAAAGAGCCTTGAGGACCC
CAATGGTGCCTTGGCCCGACATCTCAAAGACGCCTTTGCAGATGGGGTCA
ACAGTTTGATCCTGGACGGGGAAATGATTGCTTGGAATCCCGAGCAGGGC
GCCCCCGAACCATTTGGCACCTTAAAAACTGCCGCATTAGCTGAACAGAG
AAATCCGTTCTCAAACGGATCGCGGCCGCTTTTTCGTGTGTTTGATCTAC
TCTTGCTGAATGGGCACAATTTGACCAGGTACACTCTTCGCGATCGTCGA
AATGCCCTGCAGAAGAGTGTAAAGTCAGTTCACCGTCGGTTCGAAATCCA
TCCTTACGAGGAGGCTACAGACAAGGCCCAGATCGAAGCAGCGCTTCGAA
AAGTTGTTGCGGAGGCTTCTGAGGGACTAGTAGTCAAAAATCCAAGGTCA
CCATATCGCCTCAATGAACGACATGACGACTGGATGAAAGTGAAGCCTGA
GTACATGACAGAGTTTGGGGAGTCCCTGGATCTGATTGTCATAGGCGGCT
ATTACGGCAGTGGTCATCGAGGAGGGGGTCTTTCAAGCTTCCTATGTGGA
TTAAGGGCCGATAATGCCAGCTCTTCGCAAGGGATAGGGGCAACCAAATG
CTATTCTTTCTGCAAGGTCGGAGGAGGCTTTACAGCAGCAGACTATGCGA
ATATCCGTCATCATACTGATGGGAAATGGGTGGACTGGAACCCGAGGAAA
CCACCAACGGCATACATTGAGCTGGCAGGTGGCAGTGCCCAGCACGAGCG
TCCAGATCAGTGGATCAAGCCAGAGGACTCGGTGGTACTCTGTGTTAAAG
CAGCATCGGTATCAGTCAGTGATCAATTTCGTGTCGGTTTAACATTGCGC
TTCCCGCGGTTCAAGAGGTTACGCATGGATAAAGACTGGAAGAGTGCGCT
TTCCATGCAAGAATTCCTGGATCTGAAGTCGAACGTGGAGAAAGAGCAAA
AGGAGAAGGAATTCAATGTAGAGAATTTCCGCAAGAAACGAGTGAAGCGA
CCAAAGAAGGCCTTGACAGTTGCAGGATACAGCCCGAATGCAGAGGTGAA
GTATGAAGGTCCGTCAGGGCATATTTTCGACGGGCTCAACTTCTTTATTT
TGACCGACTCGGTGGCCCCGAATAAGAAAACAAAGGCGGAGTTGGAACAA
CTTGTCAAATTGAATGGAGGCAAGATATATCAGACAAATAAGGCCGCTCC
CAACACCGTATGTATCGCGGATCGAAGAACTGTGAAAGCAGCCTCCTTGC
AAAAGAGTGGCGATGTGAGCCTAATCCGACCATCTTGGATCCTAGACTGT
GTGAGGCAGAACGAGATTGATGCGGGACTGCCAGACCTGCTTCTTCCCCT
GGAACCTAGGCACATGTTCTTCACAACGCCTAGCAAGGAGGAGGAGGTAT
TGACGAGTGTTGACCGGTTCAATGATAGCTACGCTCGGGATGTCACCAAG
GAAGAGCTGGTCAGCTTACTCGAAAAGATGAGCGCGGACAATGGTAGTTC
CGACGTGCCCCCGAGAGGCGAAGCCACCAAGAAGCTTAGGGAAGCTATTC
AAGAAAAAGTGGACTCAGGATGGGATCTCCCATGCGGGTGGCTTTTTCAG
AACTTGACGTTCTTCTTTCCCGACCGGACAACGCAGGATCCAGATCCCGG
AGAGCCCGAATATGCCGGCTGCGGCTATCGACTTTCTTTGGCTCGCAATA
CGGCCAAATTTGCAGGTGCTACCGTTGTCAATACTTATGAGGACCCTTCC
ATCACCCATGTGGTTGTAGATCCGGATACACCATCTTCGGAGATCGCCAC
GCTAAGGAAAACCTTGTCTCTCCGAGTGGACCAGAAACTTCCTCACATAG
TTACCACTGAATGGATTGAGGAGAGCTGGGAGCAGCAATCATTTCTTGAT
GAAGATAGATATCATCCAAGGCCAGCTTGA
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Coding sequence (CDS) from alignment at OGUI01000014.1:558455..561484-

>ATCC64974_84300-T1 ID=ATCC64974_84300-T1|Name=ATCC64974_84300-T1|organism=Aspergillus niger N402|type=CDS|length=3030bp|location=Sequence derived from alignment at OGUI01000014.1:558455..561484- (Aspergillus niger N402)
ATGAATGAGGAAGGGGCCAGCAATTATGAAATGTCACACTCCCGCAGTCA
ACCCTCACAACAAGAGTCAAATCTGGATGAGAAATACCCAAACCGTCCTC
ATAATCACTCCCAGACATTGCCCTTTCACGAGCTCTTTGAGACCCTCTTC
AATCCGTTGAGTGAGCTCTCCAAGAAGCCTGCAGGCACCGCCGCTCCTCG
GCGAAAAGTCGGGCCTCATGGCCAGTCGGCGGCGAACCTTACCCCACACG
AAAAGCGACGGGATGTCATTGAGCGGTTCATCTCACGATGGCGGAAAGAG
GTGGGGGATGATATCTACCCTGCGTTTCGGCTGATTCTTCCGGACAAAGA
TCGCGACCGGGCCATGTACGGTATCAAAGAAAAGGCCATCGGAAAGCTAC
TCGTCAAAATTATGAAGATCGACAAAAATTCGGATGACGGCTTCAATCTT
TTGAACTGGAAGCTGCCAGGCCAGTTGGCTACCTCGCGCTTTATGGCGGG
GGATTTTGCGAGACGCTGCTACGATGTTATCTCAAAACGGCCAATGAGGA
CAGAGGTGGGAAATATGTCCATTGAGGAGGTGAATGACAGGCTCGACCAG
CTTTCAAATGCCTCGAAGGAGGAGCAGCAGCTACCCATCTTGTCGGAGTT
TTACCGAAAAATGAACCCCGAGGAGCTGCTGTGGCTGATCCGCATTATCC
TTCGACAGATGAAAGTCGGGGCTACAGAGCGAACCTTATTCAATGTATGG
CACCCAGATGCTGCAAACCTCTATAGCATATCCAGTAGCCTTCAACGTGT
TTGTTGGGAGCTGCATGATCCGAACATTCGGCTTGGGGCTGAAAACAGCG
GCATTTCTCTGATGCAATGCTTCCAGCCCCAGCTAGCTCAGTTTCAGATG
CAGTCCCTTGATCGAATGATTGCCCGAATGCGGGGTACCGAAGAAGACCC
GGTATTCTGGATCGAGGAGAAGCTCGACGGGGAACGTATGCAGCTTCATA
TGGAGACTGACAGCTCGGTGCCGGGAGGAAAGAAGTTTCGCTTCTGGTCG
AGGAAAGCGAAGGATTACACCTATCTCTATGGAAAGAGCCTTGAGGACCC
CAATGGTGCCTTGGCCCGACATCTCAAAGACGCCTTTGCAGATGGGGTCA
ACAGTTTGATCCTGGACGGGGAAATGATTGCTTGGAATCCCGAGCAGGGC
GCCCCCGAACCATTTGGCACCTTAAAAACTGCCGCATTAGCTGAACAGAG
AAATCCGTTCTCAAACGGATCGCGGCCGCTTTTTCGTGTGTTTGATCTAC
TCTTGCTGAATGGGCACAATTTGACCAGGTACACTCTTCGCGATCGTCGA
AATGCCCTGCAGAAGAGTGTAAAGTCAGTTCACCGTCGGTTCGAAATCCA
TCCTTACGAGGAGGCTACAGACAAGGCCCAGATCGAAGCAGCGCTTCGAA
AAGTTGTTGCGGAGGCTTCTGAGGGACTAGTAGTCAAAAATCCAAGGTCA
CCATATCGCCTCAATGAACGACATGACGACTGGATGAAAGTGAAGCCTGA
GTACATGACAGAGTTTGGGGAGTCCCTGGATCTGATTGTCATAGGCGGCT
ATTACGGCAGTGGTCATCGAGGAGGGGGTCTTTCAAGCTTCCTATGTGGA
TTAAGGGCCGATAATGCCAGCTCTTCGCAAGGGATAGGGGCAACCAAATG
CTATTCTTTCTGCAAGGTCGGAGGAGGCTTTACAGCAGCAGACTATGCGA
ATATCCGTCATCATACTGATGGGAAATGGGTGGACTGGAACCCGAGGAAA
CCACCAACGGCATACATTGAGCTGGCAGGTGGCAGTGCCCAGCACGAGCG
TCCAGATCAGTGGATCAAGCCAGAGGACTCGGTGGTACTCTGTGTTAAAG
CAGCATCGGTATCAGTCAGTGATCAATTTCGTGTCGGTTTAACATTGCGC
TTCCCGCGGTTCAAGAGGTTACGCATGGATAAAGACTGGAAGAGTGCGCT
TTCCATGCAAGAATTCCTGGATCTGAAGTCGAACGTGGAGAAAGAGCAAA
AGGAGAAGGAATTCAATGTAGAGAATTTCCGCAAGAAACGAGTGAAGCGA
CCAAAGAAGGCCTTGACAGTTGCAGGATACAGCCCGAATGCAGAGGTGAA
GTATGAAGGTCCGTCAGGGCATATTTTCGACGGGCTCAACTTCTTTATTT
TGACCGACTCGGTGGCCCCGAATAAGAAAACAAAGGCGGAGTTGGAACAA
CTTGTCAAATTGAATGGAGGCAAGATATATCAGACAAATAAGGCCGCTCC
CAACACCGTATGTATCGCGGATCGAAGAACTGTGAAAGCAGCCTCCTTGC
AAAAGAGTGGCGATGTGAGCCTAATCCGACCATCTTGGATCCTAGACTGT
GTGAGGCAGAACGAGATTGATGCGGGACTGCCAGACCTGCTTCTTCCCCT
GGAACCTAGGCACATGTTCTTCACAACGCCTAGCAAGGAGGAGGAGGTAT
TGACGAGTGTTGACCGGTTCAATGATAGCTACGCTCGGGATGTCACCAAG
GAAGAGCTGGTCAGCTTACTCGAAAAGATGAGCGCGGACAATGGTAGTTC
CGACGTGCCCCCGAGAGGCGAAGCCACCAAGAAGCTTAGGGAAGCTATTC
AAGAAAAAGTGGACTCAGGATGGGATCTCCCATGCGGGTGGCTTTTTCAG
AACTTGACGTTCTTCTTTCCCGACCGGACAACGCAGGATCCAGATCCCGG
AGAGCCCGAATATGCCGGCTGCGGCTATCGACTTTCTTTGGCTCGCAATA
CGGCCAAATTTGCAGGTGCTACCGTTGTCAATACTTATGAGGACCCTTCC
ATCACCCATGTGGTTGTAGATCCGGATACACCATCTTCGGAGATCGCCAC
GCTAAGGAAAACCTTGTCTCTCCGAGTGGACCAGAAACTTCCTCACATAG
TTACCACTGAATGGATTGAGGAGAGCTGGGAGCAGCAATCATTTCTTGAT
GAAGATAGATATCATCCAAGGCCAGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0051103DNA ligation involved in DNA repair
GO:0071897DNA biosynthetic process
GO:0006281DNA repair
GO:0006310DNA recombination
Vocabulary: Molecular Function
TermDefinition
GO:0003909DNA ligase activity
GO:0003677DNA binding
GO:0003910DNA ligase (ATP) activity
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LIG4ATCC64974_84300Aspergillus niger N402gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_84300-T1.cdsATCC64974_84300-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_84300-T1.exon1ATCC64974_84300-T1.exon1Aspergillus niger N402exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_84300-T1ATCC64974_84300-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR016059
DBxrefInterPro:IPR000977
DBxrefInterPro:IPR036599
DBxrefInterPro:IPR012309
DBxrefInterPro:IPR012308
DBxrefInterPro:IPR036420
DBxrefInterPro:IPR012310
DBxrefInterPro:IPR001357
DBxrefPFAM:PF09414
DBxrefPFAM:PF04675
DBxrefPFAM:PF01068
DBxrefPFAM:PF04679
DBxrefPFAM:PF16589
DBxrefPFAM:PF00533
ProductDNA ligase (ATP)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000014.1supercontigOGUI01000014.1:558455..561484 -
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