You are here

Home

ATCC64974_92250-T1, ATCC64974_92250-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_92250-T1
Unique NameATCC64974_92250-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000016.1:1710175..1711154-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_92250-T1 ID=ATCC64974_92250-T1|Name=ATCC64974_92250-T1|organism=Aspergillus niger N402|type=mRNA|length=980bp|location=Sequence derived from alignment at OGUI01000016.1:1710175..1711154- (Aspergillus niger N402)
ATGGCGGCGGAACAAAGAAAGCTGCTTGAGCAGCTCATGGGAGGTAAATT
CTCCAAGCCCAGCTTCTACCAAGCTCTAAACAGCTAACCCAATTCTTTTT
CTCCAGCGGACCAGCTCATAGGTACCGGCGCTCCCTCTCGCAATGCGCAG
CTCCAAATCACCGATCCAAAAGTCTGTCGCTCGTATCTCGTCGGCACTTG
TCCGCATGACCTCTTCACCAATACCAAGCAAGACCTGGGCCCTTGTCAGA
AAGTTCACAGCGAAGGATTGAAGACGGAGTATGAGACCGCCTCGGCAGCT
GAGAAGGCCAAATGGGGATTCGATTACGACTATATGCGCGACATGCAGAA
ATACATCGATGATTGTGACCGACGTATCGATACCGCTCAGCGACGCTTGG
AAAAGACTCCGGACGAGATCAGGCAGACCAACAACTTGGTAAGGCATATA
CTCCAGCCCAACCACAGGACACCCCAAGTGGCCAAAAGAAGACTGGACTG
ATCATATTCTCAATAATATAGCTGAAGCAAATCTCCGACCTGACCAAAAC
CATCAACACGGGTCTCCTCGAGATCTCGGTGCTGGGCGAAACCGGCTCCG
TCGCACAGGCCCTGAACGAACTTCACAAGATCCGCACAGCCAAGCACCAA
AAGGAAACGTGTGAGCGAGAACTGAAGAATCTTCAAGATACCTCCGGACC
TTCGGGTCATCAGAAGCTGCAAGTGTGCGATGTCTGCGGCGCGTACCTGA
GTCGTCTCGATAACGATCGTCGGTTGGCGGACCATTTCTTCGGAAAGATG
CACATGGGATACTCGGACATGCGCAAGGGGTATAAGAAGCTCAGCGAGGA
GCTTAAGGGACGGCCTCCGCCGGTTCGTCATCACGATGATGATGATGGTG
GTTGGGGTGGACGCTCCGGTGGTGGACGTGGTCCTCGGTATGGCGGTGGT
GGTTACAAGAAGCGCGGTCCTCGCTGGTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000016.1:1710175..1711154-

>ATCC64974_92250-T1 ID=ATCC64974_92250-T1|Name=ATCC64974_92250-T1|organism=Aspergillus niger N402|type=CDS|length=2502bp|location=Sequence derived from alignment at OGUI01000016.1:1710175..1711154- (Aspergillus niger N402)
CTGAAGCAAATCTCCGACCTGACCAAAACCATCAACACGGGTCTCCTCGA
GATCTCGGTGCTGGGCGAAACCGGCTCCGTCGCACAGGCCCTGAACGAAC
TTCACAAGATCCGCACAGCCAAGCACCAAAAGGAAACGTGTGAGCGAGAA
CTGAAGAATCTTCAAGATACCTCCGGACCTTCGGGTCATCAGAAGCTGCA
AGTGTGCGATGTCTGCGGCGCGTACCTGAGTCGTCTCGATAACGATCGTC
GGTTGGCGGACCATTTCTTCGGAAAGATGCACATGGGATACTCGGACATG
CGCAAGGGGTATAAGAAGCTCAGCGAGGAGCTTAAGGGACGGCCTCCGCC
GGTTCGTCATCACGATGATGATGATGGTGGTTGGGGTGGACGCTCCGGTG
GTGGACGTGGTCCTCGGTATGGCGGTGGTGGTTACAAGAAGCGCGGTCCT
CGCTGGTAACGGACCAGCTCATAGGTACCGGCGCTCCCTCTCGCAATGCG
CAGCTCCAAATCACCGATCCAAAAGTCTGTCGCTCGTATCTCGTCGGCAC
TTGTCCGCATGACCTCTTCACCAATACCAAGCAAGACCTGGGCCCTTGTC
AGAAAGTTCACAGCGAAGGATTGAAGACGGAGTATGAGACCGCCTCGGCA
GCTGAGAAGGCCAAATGGGGATTCGATTACGACTATATGCGCGACATGCA
GAAATACATCGATGATTGTGACCGACGTATCGATACCGCTCAGCGACGCT
TGGAAAAGACTCCGGACGAGATCAGGCAGACCAACAACTTGATGGCGGCG
GAACAAAGAAAGCTGCTTGAGCAGCTCATGGGAGCTGAAGCAAATCTCCG
ACCTGACCAAAACCATCAACACGGGTCTCCTCGAGATCTCGGTGCTGGGC
GAAACCGGCTCCGTCGCACAGGCCCTGAACGAACTTCACAAGATCCGCAC
AGCCAAGCACCAAAAGGAAACGTGTGAGCGAGAACTGAAGAATCTTCAAG
ATACCTCCGGACCTTCGGGTCATCAGAAGCTGCAAGTGTGCGATGTCTGC
GGCGCGTACCTGAGTCGTCTCGATAACGATCGTCGGTTGGCGGACCATTT
CTTCGGAAAGATGCACATGGGATACTCGGACATGCGCAAGGGGTATAAGA
AGCTCAGCGAGGAGCTTAAGGGACGGCCTCCGCCGGTTCGTCATCACGAT
GATGATGATGGTGGTTGGGGTGGACGCTCCGGTGGTGGACGTGGTCCTCG
GTATGGCGGTGGTGGTTACAAGAAGCGCGGTCCTCGCTGGTAACGGACCA
GCTCATAGGTACCGGCGCTCCCTCTCGCAATGCGCAGCTCCAAATCACCG
ATCCAAAAGTCTGTCGCTCGTATCTCGTCGGCACTTGTCCGCATGACCTC
TTCACCAATACCAAGCAAGACCTGGGCCCTTGTCAGAAAGTTCACAGCGA
AGGATTGAAGACGGAGTATGAGACCGCCTCGGCAGCTGAGAAGGCCAAAT
GGGGATTCGATTACGACTATATGCGCGACATGCAGAAATACATCGATGAT
TGTGACCGACGTATCGATACCGCTCAGCGACGCTTGGAAAAGACTCCGGA
CGAGATCAGGCAGACCAACAACTTGATGGCGGCGGAACAAAGAAAGCTGC
TTGAGCAGCTCATGGGAGCTGAAGCAAATCTCCGACCTGACCAAAACCAT
CAACACGGGTCTCCTCGAGATCTCGGTGCTGGGCGAAACCGGCTCCGTCG
CACAGGCCCTGAACGAACTTCACAAGATCCGCACAGCCAAGCACCAAAAG
GAAACGTGTGAGCGAGAACTGAAGAATCTTCAAGATACCTCCGGACCTTC
GGGTCATCAGAAGCTGCAAGTGTGCGATGTCTGCGGCGCGTACCTGAGTC
GTCTCGATAACGATCGTCGGTTGGCGGACCATTTCTTCGGAAAGATGCAC
ATGGGATACTCGGACATGCGCAAGGGGTATAAGAAGCTCAGCGAGGAGCT
TAAGGGACGGCCTCCGCCGGTTCGTCATCACGATGATGATGATGGTGGTT
GGGGTGGACGCTCCGGTGGTGGACGTGGTCCTCGGTATGGCGGTGGTGGT
TACAAGAAGCGCGGTCCTCGCTGGTAACGGACCAGCTCATAGGTACCGGC
GCTCCCTCTCGCAATGCGCAGCTCCAAATCACCGATCCAAAAGTCTGTCG
CTCGTATCTCGTCGGCACTTGTCCGCATGACCTCTTCACCAATACCAAGC
AAGACCTGGGCCCTTGTCAGAAAGTTCACAGCGAAGGATTGAAGACGGAG
TATGAGACCGCCTCGGCAGCTGAGAAGGCCAAATGGGGATTCGATTACGA
CTATATGCGCGACATGCAGAAATACATCGATGATTGTGACCGACGTATCG
ATACCGCTCAGCGACGCTTGGAAAAGACTCCGGACGAGATCAGGCAGACC
AACAACTTGATGGCGGCGGAACAAAGAAAGCTGCTTGAGCAGCTCATGGG
AG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005685U1 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0006376mRNA splice site selection
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_92250ATCC64974_92250Aspergillus niger N402gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_92250-T1ATCC64974_92250-T1-proteinAspergillus niger N402polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_92250-T1.cdsATCC64974_92250-T1.cdsAspergillus niger N402CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_92250-T1.exon3ATCC64974_92250-T1.exon3Aspergillus niger N402exon
ATCC64974_92250-T1.exon2ATCC64974_92250-T1.exon2Aspergillus niger N402exon
ATCC64974_92250-T1.exon1ATCC64974_92250-T1.exon1Aspergillus niger N402exon


Properties
Property NameValue
NoteEggNog:ENOG41
NoteBUSCO:EOG09264D7Y
DBxrefInterPro:IPR004882
DBxrefPFAM:PF03194
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000016.1supercontigOGUI01000016.1:1710175..1711154 -
Powered by Drupal