You are here

Home

KJC3_000315-T1, KJC3_000315-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_000315-T1
Unique NameKJC3_000315-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch1:523912..524237+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_000315-T1 ID=KJC3_000315-T1|Name=KJC3_000315-T1|organism=Aspergillus niger KJC3|type=mRNA|length=326bp|location=Sequence derived from alignment at ch1:523912..524237+ (Aspergillus niger KJC3)
ATGCCTCGTGCCGTCAGAGGTATCACAACCGCAGCACCGTCCAATCCCAA
CTATCGCTAACGAAGGCCTAAACAGGAGTCCTCATCGAGTGCGATCCGTC
CGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCG
TCGAAGACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTG
CAGAACCTGAAAGCGAGGTTGACAAAGGTAGGGATGCCGGAATGAGCTGT
TTGAGGCCTGACGCTGATGAGGCAACAGGAGCTTGACGATAAGGTTATGC
AGCCTGATGAGTCGGAATCGGAGTGA
back to top

Coding sequence (CDS) from alignment at ch1:523912..524237+

>KJC3_000315-T1 ID=KJC3_000315-T1|Name=KJC3_000315-T1|organism=Aspergillus niger KJC3|type=CDS|length=657bp|location=Sequence derived from alignment at ch1:523912..524237+ (Aspergillus niger KJC3)
ATGCCTCGTGCCGTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAA
AGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCGTCGAAG
ACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAAC
CTGAAAGCGAGGTTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGA
TGAGTCGGAATCGGAGTGAATGCCTCGTGCCGTCAGAGGAGTCCTCATCG
AGTGCGATCCGTCCGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGA
CACGACTATATCGTCGAAGACCTCGACGATGACCGTCATCTGGTCATCAA
GGAGAGCCAGCTGCAGAACCTGAAAGCGAGGTTGACAAAGGAGCTTGACG
ATAAGGTTATGCAGCCTGATGAGTCGGAATCGGAGTGAATGCCTCGTGCC
GTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAAAGCCATTATCCT
CAAGTACGACGAAGAAAGACACGACTATATCGTCGAAGACCTCGACGATG
ACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAACCTGAAAGCGAGG
TTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGATGAGTCGGAATC
GGAGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006367transcription initiation from RNA polymerase II promoter
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TFB5KJC3_000315Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000315-T1.exon1KJC3_000315-T1.exon1Aspergillus niger KJC3exon
KJC3_000315-T1.exon2KJC3_000315-T1.exon2Aspergillus niger KJC3exon
KJC3_000315-T1.exon3KJC3_000315-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000315-T1.cdsKJC3_000315-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_000315-T1KJC3_000315-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_1.2
DBxrefInterPro:IPR035935
DBxrefInterPro:IPR009400
DBxrefPFAM:PF06331
ProductTFIIH complex subunit tfb5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch1supercontigch1:523912..524237 +
Powered by Drupal