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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:708268..709497+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_000386-T1 ID=KJC3_000386-T1|Name=KJC3_000386-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1230bp|location=Sequence derived from alignment at ch1:708268..709497+ (Aspergillus niger KJC3)
TCACAAACTTTGCTGAACCAAGCCAACCAGTCCAATAGTGCCCGGAATCC
TGCAGTGGTCGGATTACATCACAGCGGGCCGGTTTCCTAATCGGGCGCAT
CCGCCACGCGACCGACATTCCTCCCTATTGAACCAAAACAGACTTCTAAT
TTCATCGTCTCATCTTCATTTTCATCCCATTGATCCATTGATTAGAAACA
AAAGAAAGACCAATTGACCACTCTTCAACATGCTCGCGTGGTGAGTTGAG
CAATACCTACCCAATCACCACGGCTGCGACCTCCACCCCCCAGACTAACA
ATAGTAAACTACAGGTACCAGAGATGTCTTATCCAGCGTCCTCTCTTGAC
GCAGAGCCTCACCACAGCGGTAAGCTTCAATCCCCCCCATATCTCATTCT
TTCAGTAAAGCTAAGACGGAAATAATCAGACCCTCTTCGCAGTAGGTGAC
GGCCTCGCCCAACAAGCCGTCGAAAAGAAGGGCCTGCCCAATCATGATGT
AACCCGAACTGGCCGAATGGCTTTATACGGTGGTGGTAAGCCCAGCCCCC
GATCCCTCACCCCCCTTCATTCCCTCTAAACAAAAGCAAAAATAATATAC
AGCTGTTTTCGGCCCGGTCGCCACAAAATGGTTCCAATTCCTACAGAACC
GCGTCCAGCTATCAACACCAACCAAGACTCTTGCGGCGCGCGTTGGTGCT
GACCAGCTCGTCTGCGCTCCTACTATGATTGGTGTCTTCCTCACCAGTAT
GTCTGTCATGGAGGGTGTCAACCCCCAGGAGAAGCTCAGTAGGACGTACT
GGGATGCGCTGCGCGCCAATTGGATGCTCTGGCCAGCGGTTCAGACGCTG
AACCTTGCTTTGGTGCCGTTGCAGTATCGTGTGTTGACGGTTAATGTGGT
TAATATTGGTATGTATATTTCTCTGCTTCTTTTCTACGGATGTATCTTGG
ATATTGGGTAAAGCTAATACTTGGATAGGATGGAATTGCTTCCTGAGCTT
GGTCAATAGCGTCCCTCATGGGGATGAGGTTGCACCGGGAGTTTGACGTT
TTGACTCTTTGGATTCCCTGTATCAATTATGTTTGGGTTGGTTGTTTGCT
ACGGTATTGATTATGTCGGATAGATGGCAAATTTTACTGGCTTAGAATAG
ATTTCGATTTCTGTTATTCCCTTGTCTGAAATGATAATTGCCGGATACAC
CTTACAGAACTCATCGCTCACATTCGTCTG back to topCoding sequence (CDS) from alignment at ch1:708268..709497+ >KJC3_000386-T1 ID=KJC3_000386-T1|Name=KJC3_000386-T1|organism=Aspergillus niger KJC3|type=CDS|length=2730bp|location=Sequence derived from alignment at ch1:708268..709497+ (Aspergillus niger KJC3)
ATGCTCGCGTGGTACCAGAGATGTCTTATCCAGCGTCCTCTCTTGACGCA
GAGCCTCACCACAGCGACCCTCTTCGCAGTAGGTGACGGCCTCGCCCAAC
AAGCCGTCGAAAAGAAGGGCCTGCCCAATCATGATGTAACCCGAACTGGC
CGAATGGCTTTATACGGTGGTGCTGTTTTCGGCCCGGTCGCCACAAAATG
GTTCCAATTCCTACAGAACCGCGTCCAGCTATCAACACCAACCAAGACTC
TTGCGGCGCGCGTTGGTGCTGACCAGCTCGTCTGCGCTCCTACTATGATT
GGTGTCTTCCTCACCAGTATGTCTGTCATGGAGGGTGTCAACCCCCAGGA
GAAGCTCAGTAGGACGTACTGGGATGCGCTGCGCGCCAATTGGATGCTCT
GGCCAGCGGTTCAGACGCTGAACCTTGCTTTGGTGCCGTTGCAGTATCGT
GTGTTGACGGTTAATGTGGTTAATATTGGATGGAATTGCTTCCTGAGCTT
GGTCAATAGCGTCCCTCATGGGGATGAGGTTGCACCGGGAGTTTGAATGC
TCGCGTGGTACCAGAGATGTCTTATCCAGCGTCCTCTCTTGACGCAGAGC
CTCACCACAGCGACCCTCTTCGCAGTAGGTGACGGCCTCGCCCAACAAGC
CGTCGAAAAGAAGGGCCTGCCCAATCATGATGTAACCCGAACTGGCCGAA
TGGCTTTATACGGTGGTGCTGTTTTCGGCCCGGTCGCCACAAAATGGTTC
CAATTCCTACAGAACCGCGTCCAGCTATCAACACCAACCAAGACTCTTGC
GGCGCGCGTTGGTGCTGACCAGCTCGTCTGCGCTCCTACTATGATTGGTG
TCTTCCTCACCAGTATGTCTGTCATGGAGGGTGTCAACCCCCAGGAGAAG
CTCAGTAGGACGTACTGGGATGCGCTGCGCGCCAATTGGATGCTCTGGCC
AGCGGTTCAGACGCTGAACCTTGCTTTGGTGCCGTTGCAGTATCGTGTGT
TGACGGTTAATGTGGTTAATATTGGATGGAATTGCTTCCTGAGCTTGGTC
AATAGCGTCCCTCATGGGGATGAGGTTGCACCGGGAGTTTGAATGCTCGC
GTGGTACCAGAGATGTCTTATCCAGCGTCCTCTCTTGACGCAGAGCCTCA
CCACAGCGACCCTCTTCGCAGTAGGTGACGGCCTCGCCCAACAAGCCGTC
GAAAAGAAGGGCCTGCCCAATCATGATGTAACCCGAACTGGCCGAATGGC
TTTATACGGTGGTGCTGTTTTCGGCCCGGTCGCCACAAAATGGTTCCAAT
TCCTACAGAACCGCGTCCAGCTATCAACACCAACCAAGACTCTTGCGGCG
CGCGTTGGTGCTGACCAGCTCGTCTGCGCTCCTACTATGATTGGTGTCTT
CCTCACCAGTATGTCTGTCATGGAGGGTGTCAACCCCCAGGAGAAGCTCA
GTAGGACGTACTGGGATGCGCTGCGCGCCAATTGGATGCTCTGGCCAGCG
GTTCAGACGCTGAACCTTGCTTTGGTGCCGTTGCAGTATCGTGTGTTGAC
GGTTAATGTGGTTAATATTGGATGGAATTGCTTCCTGAGCTTGGTCAATA
GCGTCCCTCATGGGGATGAGGTTGCACCGGGAGTTTGAATGCTCGCGTGG
TACCAGAGATGTCTTATCCAGCGTCCTCTCTTGACGCAGAGCCTCACCAC
AGCGACCCTCTTCGCAGTAGGTGACGGCCTCGCCCAACAAGCCGTCGAAA
AGAAGGGCCTGCCCAATCATGATGTAACCCGAACTGGCCGAATGGCTTTA
TACGGTGGTGCTGTTTTCGGCCCGGTCGCCACAAAATGGTTCCAATTCCT
ACAGAACCGCGTCCAGCTATCAACACCAACCAAGACTCTTGCGGCGCGCG
TTGGTGCTGACCAGCTCGTCTGCGCTCCTACTATGATTGGTGTCTTCCTC
ACCAGTATGTCTGTCATGGAGGGTGTCAACCCCCAGGAGAAGCTCAGTAG
GACGTACTGGGATGCGCTGCGCGCCAATTGGATGCTCTGGCCAGCGGTTC
AGACGCTGAACCTTGCTTTGGTGCCGTTGCAGTATCGTGTGTTGACGGTT
AATGTGGTTAATATTGGATGGAATTGCTTCCTGAGCTTGGTCAATAGCGT
CCCTCATGGGGATGAGGTTGCACCGGGAGTTTGAATGCTCGCGTGGTACC
AGAGATGTCTTATCCAGCGTCCTCTCTTGACGCAGAGCCTCACCACAGCG
ACCCTCTTCGCAGTAGGTGACGGCCTCGCCCAACAAGCCGTCGAAAAGAA
GGGCCTGCCCAATCATGATGTAACCCGAACTGGCCGAATGGCTTTATACG
GTGGTGCTGTTTTCGGCCCGGTCGCCACAAAATGGTTCCAATTCCTACAG
AACCGCGTCCAGCTATCAACACCAACCAAGACTCTTGCGGCGCGCGTTGG
TGCTGACCAGCTCGTCTGCGCTCCTACTATGATTGGTGTCTTCCTCACCA
GTATGTCTGTCATGGAGGGTGTCAACCCCCAGGAGAAGCTCAGTAGGACG
TACTGGGATGCGCTGCGCGCCAATTGGATGCTCTGGCCAGCGGTTCAGAC
GCTGAACCTTGCTTTGGTGCCGTTGCAGTATCGTGTGTTGACGGTTAATG
TGGTTAATATTGGATGGAATTGCTTCCTGAGCTTGGTCAATAGCGTCCCT
CATGGGGATGAGGTTGCACCGGGAGTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000386-T1.utr5p1 | KJC3_000386-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_000386-T1.utr3p1 | KJC3_000386-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007248 |
| DBxref | PFAM:PF04117 |
| Product | Protein required for ethanol metabolism |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:708268..709497 + |
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