|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3157060..3157973- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001233-T1 ID=KJC3_001233-T1|Name=KJC3_001233-T1|organism=Aspergillus niger KJC3|type=mRNA|length=914bp|location=Sequence derived from alignment at ch1:3157060..3157973- (Aspergillus niger KJC3)
ATGATAGCGGAACTACTTGACTCTGGCTATCGCGGCAAAACATCGGCCCG
TGATCTGATTTTCCGCCTTCTCCAAAATCTTCTGGGCTCAACGATATCGA
TAGCAACGAATACCGCTCCCGTTCCCCGCTGGTGTACTTTTTCTTTCTGT
TTAGCGGCGAAGGTCTATTATCACAAAATGGGTGTGCAAAAGAAGACTCG
CAAGTTCGCGCAGGTATGTCTCTGTGGCTTCGCAGCAGATACGGAACGGA
AACTGATCCTACTGAATCTATAGATGAAGCGCGCCATCAAAGCCCGTGAT
GAGCGACTGAAGAAGCCGGAAGCGAAAAAGGAGACGCCCAAGGAGGATCA
GCTGACTCGACAAGTCACCCAAGCTCCTTCGAACATGTTCTTTGCCGCGA
ACACTGCCCTTGGCCCTCCCTACCACGTGCTGGTCGATACCAACTTTGTT
TCCCACGCCATTCGAGCCAAGCAGGACCTACTTACTTCGATGATGGACTT
GTGAGTTGGAACACTATTTGGACTTTGGATATATGCTAAGACTGGCTGCA
GGCTGTACGCGAAGTGTATTCCGACCTTCTCAGACTGCACTATCGCGGAA
TTGGAAAAGCTGGGTGACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGA
CCCTCGGTGGTCTAGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATG
ACTGTATCGTGGATCGGGTGAGTGGTTACTCAAATTTTTCTTGGGTAGCA
CAGCGCGCTAACGACTCTTGTAGGTGACCAAGCATAGAATTTACATTGTG
GCGACCAATGATCAAGATCTGTGTCGCCGCCTGCGCAAGATTCCTGGTGT
TCCGATCATGAAGGTTGCTAGGGGCAAATTCACCATCGAGAAGTTGCCCG
ATGCTTTGGATTAA back to topCoding sequence (CDS) from alignment at ch1:3157060..3157973- >KJC3_001233-T1 ID=KJC3_001233-T1|Name=KJC3_001233-T1|organism=Aspergillus niger KJC3|type=CDS|length=2988bp|location=Sequence derived from alignment at ch1:3157060..3157973- (Aspergillus niger KJC3)
GTGACCAAGCATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTG
TCGCCGCCTGCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCTAGGG
GCAAATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTAAGCTGTACGC
GAAGTGTATTCCGACCTTCTCAGACTGCACTATCGCGGAATTGGAAAAGC
TGGGTGACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGG
TCTAGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGT
GGATCGGATGAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGC
CGGAAGCGAAAAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTC
ACCCAAGCTCCTTCGAACATGTTCTTTGCCGCGAACACTGCCCTTGGCCC
TCCCTACCACGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAG
CCAAGCAGGACCTACTTACTTCGATGATGGACTTATGATAGCGGAACTAC
TTGACTCTGGCTATCGCGGCAAAACATCGGCCCGTGATCTGATTTTCCGC
CTTCTCCAAAATCTTCTGGGCTCAACGATATCGATAGCAACGAATACCGC
TCCCGTTCCCCGCTGGTGTACTTTTTCTTTCTGTTTAGCGGCGAAGGTCT
ATTATCACAAAATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGGTG
ACCAAGCATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTGTCG
CCGCCTGCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCTAGGGGCA
AATTCACCATCGAGAAGTTGCCCGATGCTTTGGATTAAGCTGTACGCGAA
GTGTATTCCGACCTTCTCAGACTGCACTATCGCGGAATTGGAAAAGCTGG
GTGACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCT
AGGGTTAAGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGTGGA
TCGGATGAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGCCGG
AAGCGAAAAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACC
CAAGCTCCTTCGAACATGTTCTTTGCCGCGAACACTGCCCTTGGCCCTCC
CTACCACGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAGCCA
AGCAGGACCTACTTACTTCGATGATGGACTTATGATAGCGGAACTACTTG
ACTCTGGCTATCGCGGCAAAACATCGGCCCGTGATCTGATTTTCCGCCTT
CTCCAAAATCTTCTGGGCTCAACGATATCGATAGCAACGAATACCGCTCC
CGTTCCCCGCTGGTGTACTTTTTCTTTCTGTTTAGCGGCGAAGGTCTATT
ATCACAAAATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGGTGACC
AAGCATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTGTCGCCG
CCTGCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCTAGGGGCAAAT
TCACCATCGAGAAGTTGCCCGATGCTTTGGATTAAGCTGTACGCGAAGTG
TATTCCGACCTTCTCAGACTGCACTATCGCGGAATTGGAAAAGCTGGGTG
ACAAGTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCTAGG
GTTAAGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGTGGATCG
GATGAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGCCGGAAG
CGAAAAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACCCAA
GCTCCTTCGAACATGTTCTTTGCCGCGAACACTGCCCTTGGCCCTCCCTA
CCACGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAGCCAAGC
AGGACCTACTTACTTCGATGATGGACTTATGATAGCGGAACTACTTGACT
CTGGCTATCGCGGCAAAACATCGGCCCGTGATCTGATTTTCCGCCTTCTC
CAAAATCTTCTGGGCTCAACGATATCGATAGCAACGAATACCGCTCCCGT
TCCCCGCTGGTGTACTTTTTCTTTCTGTTTAGCGGCGAAGGTCTATTATC
ACAAAATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAGGTGACCAAG
CATAGAATTTACATTGTGGCGACCAATGATCAAGATCTGTGTCGCCGCCT
GCGCAAGATTCCTGGTGTTCCGATCATGAAGGTTGCTAGGGGCAAATTCA
CCATCGAGAAGTTGCCCGATGCTTTGGATTAAGCTGTACGCGAAGTGTAT
TCCGACCTTCTCAGACTGCACTATCGCGGAATTGGAAAAGCTGGGTGACA
AGTACCGCCTCGCACTTCGGGTTGCCAAAGACCCTCGGTGGTCTAGGGTT
AAGTGCTCTCACAAGGGTACCTATGCAGATGACTGTATCGTGGATCGGAT
GAAGCGCGCCATCAAAGCCCGTGATGAGCGACTGAAGAAGCCGGAAGCGA
AAAAGGAGACGCCCAAGGAGGATCAGCTGACTCGACAAGTCACCCAAGCT
CCTTCGAACATGTTCTTTGCCGCGAACACTGCCCTTGGCCCTCCCTACCA
CGTGCTGGTCGATACCAACTTTGTTTCCCACGCCATTCGAGCCAAGCAGG
ACCTACTTACTTCGATGATGGACTTATGATAGCGGAACTACTTGACTCTG
GCTATCGCGGCAAAACATCGGCCCGTGATCTGATTTTCCGCCTTCTCCAA
AATCTTCTGGGCTCAACGATATCGATAGCAACGAATACCGCTCCCGTTCC
CCGCTGGTGTACTTTTTCTTTCTGTTTAGCGGCGAAGGTCTATTATCACA
AAATGGGTGTGCAAAAGAAGACTCGCAAGTTCGCGCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0032040 | small-subunit processome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264SET |
| DBxref | InterPro:IPR029060 |
| DBxref | InterPro:IPR006984 |
| DBxref | InterPro:IPR002716 |
| DBxref | PFAM:PF18477 |
| DBxref | PFAM:PF04900 |
| Product | rRNA-processing protein fcf1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3157060..3157973 - |
|
