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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch1:3798560..3800356- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001451-T1 ID=KJC3_001451-T1|Name=KJC3_001451-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1797bp|location=Sequence derived from alignment at ch1:3798560..3800356- (Aspergillus niger KJC3)
GGCCTTGTCATCGGAGCTGTCGCGCAGCGTATTCACCAGCTGCTGCAAAA
AATCACGCTCTGCTTCCAGTTCGTTAAGCTTGCGCTTGTGTGATAGCTTC
CGTCGCATATCCTCGTCTAGGTCGAAGACACACAGGGTCTGATTTTTGAT
GCATCGGTCACACACCGTGGTTCCGCTTCCAATGGAACACTATCTCAAGT
TCAACATTACTAGGAAGGCATGAGTAGGGAGAAAAGAGCTACTACCTTGC
ATTTTAAGCGCTTACACTCCCGACAGGCAGCTGAGGCCTTTTGTTTGGGA
AAAATAGGTGATACAGAGACATTCGTGTTGAATGGCATAGGCCTGTCAGC
AGTTTCGGGACGCAGGGCAGGGGCAAGAGGCTTATGGAGCAGGAAGTCCC
GGGGCGGTTGGGAACGGGGCGGAGTGGACATGTTTAGTGTGAGTGGGTCA
GATATTAGCAAGGACGAGAGGGTTCTTAAGGAACAGCTCCTCGAACGCCA
ATTCGACAGCAATGACAGGGCTGCGGGAGTGAGGGAATGATGATCGTCTT
CCAAGTACGTTGCCGGGCATTATAAGCCACCATCTCATATCATCCTATCG
GGGTGAGGGAGGATGCAGTTGGTATTTAAGAGTCTGTAGGGTATCGGGGT
CTGATTAGAAACATTGCCGCTTGTAGCAGGCACGGGAGCGGGAATGCGCT
ACCATACTTGATTCGTCCCCCGACAACCAGGGAAGGGGCCCCCAGGTTAA
TGACATCAACGACCGGCGACTTCCAACCTTCGCTCTGATTATCTGGCTAC
CAAGTTACTCCATAGCCGTTTTTGCGCCACACCAAATCACTGATGGGTTG
TGCAAATGATTTCGGCCTCCCTCCGCTTTGTGCGATGGTGGACACGCTAG
AGTCGTACCCCTTCGGTGTCGCGGCGCCCAACGAACCCTCCTTTACACTT
GCGCCCGAGCATTCGGCCGTTGGGGGAACTGCCAAGCAGCCCTGGGTCCC
CGAGAGCCCAAGGGACGTTATTCCCCTGGCCTTTCGCCCGTCTTCCCGGC
CGGATTTTGTGGACCGACCGGGCTCATATCGCTATCCGTCTTCATCGTCT
TCATCCCGCGAAGTACAGGGCTCAGCTAGCAAAGTTGCTATTCCCCGCAT
AACGTGCGACAGCAGCAAGTCGCAAGTGCGGCGGTGCACAAAAGCCTGTG
GACCATGTCGGCAGCGGAAGATCAAGTGTGACGGAAACAAACCGGTCTGC
CGACCGTGTGTAGACCGCAATGTCAGTTGTTTCTATACAGACGTTAAGCG
GGTCCGCGACCGCAAGCAACTGTCGGTCCTGCAGAGGAAGGTCGAGCAAT
ATGAGCGGCTGTTACATCATTTGGAGGAGGTCGACGGGAATGTGGCTAGG
CGTGTTCGAACGGCTCTCAGGGTAAGTCTCAGTGCGTGGCCATATGTCTC
CTAGTCTCAGGCTCACTGCCTAAATCAAAAGGGGTTCGATGCGACGTCTG
CTACTGCTGATGACGGCGATTCCGACTCTTCGAATTCCTCAGTCGGGTCG
CTGAACGGGCTAGACTTAGTCCAGGAGGACTTGAACCGAAGCGAAAAGTC
CGTCGCTACCGGATTTTTTTGGGAAAAACTCGGAGGTAGCGTGGATGCAG
GGGCTTGAAGACGAAGCAAAGAATCGAAGCTGGAGGAAAGCAGAATCACT
GGATTCCGAGGCCAGTAAGGCTGTCAGGATCCGACTGCCACTTCCATGCT
CGCAGATGCAGAGCACAGAGATTTCAGCGATCACCTTTTACTTGGAC back to topCoding sequence (CDS) from alignment at ch1:3798560..3800356- >KJC3_001451-T1 ID=KJC3_001451-T1|Name=KJC3_001451-T1|organism=Aspergillus niger KJC3|type=CDS|length=1512bp|location=Sequence derived from alignment at ch1:3798560..3800356- (Aspergillus niger KJC3)
GGGTTCGATGCGACGTCTGCTACTGCTGATGACGGCGATTCCGACTCTTC
GAATTCCTCAGTCGGGTCGCTGAACGGGCTAGACTTAGTCCAGGAGGACT
TGAACCGAAGCGAAAAGTCCGTCGCTACCGGATTTTTTTGGGAAAAACTC
GGAGGTAGCGTGGATGCAGGGGCTTGAATGGGTTGTGCAAATGATTTCGG
CCTCCCTCCGCTTTGTGCGATGGTGGACACGCTAGAGTCGTACCCCTTCG
GTGTCGCGGCGCCCAACGAACCCTCCTTTACACTTGCGCCCGAGCATTCG
GCCGTTGGGGGAACTGCCAAGCAGCCCTGGGTCCCCGAGAGCCCAAGGGA
CGTTATTCCCCTGGCCTTTCGCCCGTCTTCCCGGCCGGATTTTGTGGACC
GACCGGGCTCATATCGCTATCCGTCTTCATCGTCTTCATCCCGCGAAGTA
CAGGGCTCAGCTAGCAAAGTTGCTATTCCCCGCATAACGTGCGACAGCAG
CAAGTCGCAAGTGCGGCGGTGCACAAAAGCCTGTGGACCATGTCGGCAGC
GGAAGATCAAGTGTGACGGAAACAAACCGGTCTGCCGACCGTGTGTAGAC
CGCAATGTCAGTTGTTTCTATACAGACGTTAAGCGGGTCCGCGACCGCAA
GCAACTGTCGGTCCTGCAGAGGAAGGTCGAGCAATATGAGCGGCTGTTAC
ATCATTTGGAGGAGGTCGACGGGAATGTGGCTAGGCGTGTTCGAACGGCT
CTCAGGGGGTTCGATGCGACGTCTGCTACTGCTGATGACGGCGATTCCGA
CTCTTCGAATTCCTCAGTCGGGTCGCTGAACGGGCTAGACTTAGTCCAGG
AGGACTTGAACCGAAGCGAAAAGTCCGTCGCTACCGGATTTTTTTGGGAA
AAACTCGGAGGTAGCGTGGATGCAGGGGCTTGAATGGGTTGTGCAAATGA
TTTCGGCCTCCCTCCGCTTTGTGCGATGGTGGACACGCTAGAGTCGTACC
CCTTCGGTGTCGCGGCGCCCAACGAACCCTCCTTTACACTTGCGCCCGAG
CATTCGGCCGTTGGGGGAACTGCCAAGCAGCCCTGGGTCCCCGAGAGCCC
AAGGGACGTTATTCCCCTGGCCTTTCGCCCGTCTTCCCGGCCGGATTTTG
TGGACCGACCGGGCTCATATCGCTATCCGTCTTCATCGTCTTCATCCCGC
GAAGTACAGGGCTCAGCTAGCAAAGTTGCTATTCCCCGCATAACGTGCGA
CAGCAGCAAGTCGCAAGTGCGGCGGTGCACAAAAGCCTGTGGACCATGTC
GGCAGCGGAAGATCAAGTGTGACGGAAACAAACCGGTCTGCCGACCGTGT
GTAGACCGCAATGTCAGTTGTTTCTATACAGACGTTAAGCGGGTCCGCGA
CCGCAAGCAACTGTCGGTCCTGCAGAGGAAGGTCGAGCAATATGAGCGGC
TGTTACATCATTTGGAGGAGGTCGACGGGAATGTGGCTAGGCGTGTTCGA
ACGGCTCTCAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001451-T1.utr3p1 | KJC3_001451-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001451-T1.utr5p1 | KJC3_001451-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch1 | supercontig | ch1:3798560..3800356 - |
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