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KJC3_002041-T1, KJC3_002041-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002041-T1
Unique NameKJC3_002041-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1518256..1519217+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002041-T1 ID=KJC3_002041-T1|Name=KJC3_002041-T1|organism=Aspergillus niger KJC3|type=mRNA|length=962bp|location=Sequence derived from alignment at ch2:1518256..1519217+ (Aspergillus niger KJC3)
ATGGCCACTGGTCCAGCTACTCAATCCCTCAAGGTCAGCATCATCCACCT
GCGTGTCCGTCTGTCAGATTGCGGCTAACGGAGCGCTGGTGCACACAGTG
TGTGGTGACGGGTGATGGTGCGGTAGGAAAAGTATGTTGCTCCCCTTTCA
GCCAGCTCGACCTCTCTCTCCCTCCCCCTCCCTCCCCCCTCTCGCTTCCT
AGATCGGTCGATTTCGTTATCGCTGTTGCTAATCGAACGATAGACATGTC
TCCTGATTTCGTACACGACCAACGCTTTCCCCGGCGAATATATCCCTACC
GTGTCCGTACCCCCCTTGGACCCTGATACTCCTCGTCTGATGCGGACCTC
GTGTGTTGACCGGATTCCCGCAGATTTGATAACTACACCGCTAGTGTCAT
GGTAGATGGCCGACCGATTAGCTTGGGACTCTGGGATACTGCTGGACAGG
AAGATTACGACCGTCTTCGCCCATTGTCCTACCCGCAAACCGACGTCTTC
CTGATCTGCTTCTCCATCGTTAGCCCGCCGTCCTTTGACAACGTTAAAGC
CAAGGTGCTTCCTTCACCATCCCTATCGACCGGAGACCCGCTTACTGACC
CTGACGGATGTAGTGGTTCCCGGAGATTGAACACCATGCCCCCAACGTCC
CCATTATCTTGGTCGGCACCAAGCTCGACCTTCGAGACGACCGTGGTACC
ATAGATGCTCTCCGACAGCGGAAGATGGAGCCCGTCTCCTACGAACAAGC
TCTGGCCGTGGCCAAGGAAATCCGGGCACACAAGTACCTCGAATGTTCGG
CCCTGACGCAGCGCAACCTGAAGAGTGTATTCGACGAGGCGATTCGGTAT
GTTCGAACAAACCCATATACTACTGGAATTGGGGGACTAACGTTCACATA
GCGCCGTGCTCAATCCCCGGCCTGCGGCCAAACCGAAGAACAAGAAATGC
GTGATTCTGTAG
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Coding sequence (CDS) from alignment at ch2:1518256..1519217+

>KJC3_002041-T1 ID=KJC3_002041-T1|Name=KJC3_002041-T1|organism=Aspergillus niger KJC3|type=CDS|length=3600bp|location=Sequence derived from alignment at ch2:1518256..1519217+ (Aspergillus niger KJC3)
ATGGCCACTGGTCCAGCTACTCAATCCCTCAAGTGTGTGGTGACGGGTGA
TGGTGCGGTAGGAAAAACATGTCTCCTGATTTCGTACACGACCAACGCTT
TCCCCGGCGAATATATCCCTACCGTATTTGATAACTACACCGCTAGTGTC
ATGGTAGATGGCCGACCGATTAGCTTGGGACTCTGGGATACTGCTGGACA
GGAAGATTACGACCGTCTTCGCCCATTGTCCTACCCGCAAACCGACGTCT
TCCTGATCTGCTTCTCCATCGTTAGCCCGCCGTCCTTTGACAACGTTAAA
GCCAAGTGGTTCCCGGAGATTGAACACCATGCCCCCAACGTCCCCATTAT
CTTGGTCGGCACCAAGCTCGACCTTCGAGACGACCGTGGTACCATAGATG
CTCTCCGACAGCGGAAGATGGAGCCCGTCTCCTACGAACAAGCTCTGGCC
GTGGCCAAGGAAATCCGGGCACACAAGTACCTCGAATGTTCGGCCCTGAC
GCAGCGCAACCTGAAGAGTGTATTCGACGAGGCGATTCGCGCCGTGCTCA
ATCCCCGGCCTGCGGCCAAACCGAAGAACAAGAAATGCGTGATTCTGTAG
ATGGCCACTGGTCCAGCTACTCAATCCCTCAAGTGTGTGGTGACGGGTGA
TGGTGCGGTAGGAAAAACATGTCTCCTGATTTCGTACACGACCAACGCTT
TCCCCGGCGAATATATCCCTACCGTATTTGATAACTACACCGCTAGTGTC
ATGGTAGATGGCCGACCGATTAGCTTGGGACTCTGGGATACTGCTGGACA
GGAAGATTACGACCGTCTTCGCCCATTGTCCTACCCGCAAACCGACGTCT
TCCTGATCTGCTTCTCCATCGTTAGCCCGCCGTCCTTTGACAACGTTAAA
GCCAAGTGGTTCCCGGAGATTGAACACCATGCCCCCAACGTCCCCATTAT
CTTGGTCGGCACCAAGCTCGACCTTCGAGACGACCGTGGTACCATAGATG
CTCTCCGACAGCGGAAGATGGAGCCCGTCTCCTACGAACAAGCTCTGGCC
GTGGCCAAGGAAATCCGGGCACACAAGTACCTCGAATGTTCGGCCCTGAC
GCAGCGCAACCTGAAGAGTGTATTCGACGAGGCGATTCGCGCCGTGCTCA
ATCCCCGGCCTGCGGCCAAACCGAAGAACAAGAAATGCGTGATTCTGTAG
ATGGCCACTGGTCCAGCTACTCAATCCCTCAAGTGTGTGGTGACGGGTGA
TGGTGCGGTAGGAAAAACATGTCTCCTGATTTCGTACACGACCAACGCTT
TCCCCGGCGAATATATCCCTACCGTATTTGATAACTACACCGCTAGTGTC
ATGGTAGATGGCCGACCGATTAGCTTGGGACTCTGGGATACTGCTGGACA
GGAAGATTACGACCGTCTTCGCCCATTGTCCTACCCGCAAACCGACGTCT
TCCTGATCTGCTTCTCCATCGTTAGCCCGCCGTCCTTTGACAACGTTAAA
GCCAAGTGGTTCCCGGAGATTGAACACCATGCCCCCAACGTCCCCATTAT
CTTGGTCGGCACCAAGCTCGACCTTCGAGACGACCGTGGTACCATAGATG
CTCTCCGACAGCGGAAGATGGAGCCCGTCTCCTACGAACAAGCTCTGGCC
GTGGCCAAGGAAATCCGGGCACACAAGTACCTCGAATGTTCGGCCCTGAC
GCAGCGCAACCTGAAGAGTGTATTCGACGAGGCGATTCGCGCCGTGCTCA
ATCCCCGGCCTGCGGCCAAACCGAAGAACAAGAAATGCGTGATTCTGTAG
ATGGCCACTGGTCCAGCTACTCAATCCCTCAAGTGTGTGGTGACGGGTGA
TGGTGCGGTAGGAAAAACATGTCTCCTGATTTCGTACACGACCAACGCTT
TCCCCGGCGAATATATCCCTACCGTATTTGATAACTACACCGCTAGTGTC
ATGGTAGATGGCCGACCGATTAGCTTGGGACTCTGGGATACTGCTGGACA
GGAAGATTACGACCGTCTTCGCCCATTGTCCTACCCGCAAACCGACGTCT
TCCTGATCTGCTTCTCCATCGTTAGCCCGCCGTCCTTTGACAACGTTAAA
GCCAAGTGGTTCCCGGAGATTGAACACCATGCCCCCAACGTCCCCATTAT
CTTGGTCGGCACCAAGCTCGACCTTCGAGACGACCGTGGTACCATAGATG
CTCTCCGACAGCGGAAGATGGAGCCCGTCTCCTACGAACAAGCTCTGGCC
GTGGCCAAGGAAATCCGGGCACACAAGTACCTCGAATGTTCGGCCCTGAC
GCAGCGCAACCTGAAGAGTGTATTCGACGAGGCGATTCGCGCCGTGCTCA
ATCCCCGGCCTGCGGCCAAACCGAAGAACAAGAAATGCGTGATTCTGTAG
ATGGCCACTGGTCCAGCTACTCAATCCCTCAAGTGTGTGGTGACGGGTGA
TGGTGCGGTAGGAAAAACATGTCTCCTGATTTCGTACACGACCAACGCTT
TCCCCGGCGAATATATCCCTACCGTATTTGATAACTACACCGCTAGTGTC
ATGGTAGATGGCCGACCGATTAGCTTGGGACTCTGGGATACTGCTGGACA
GGAAGATTACGACCGTCTTCGCCCATTGTCCTACCCGCAAACCGACGTCT
TCCTGATCTGCTTCTCCATCGTTAGCCCGCCGTCCTTTGACAACGTTAAA
GCCAAGTGGTTCCCGGAGATTGAACACCATGCCCCCAACGTCCCCATTAT
CTTGGTCGGCACCAAGCTCGACCTTCGAGACGACCGTGGTACCATAGATG
CTCTCCGACAGCGGAAGATGGAGCCCGTCTCCTACGAACAAGCTCTGGCC
GTGGCCAAGGAAATCCGGGCACACAAGTACCTCGAATGTTCGGCCCTGAC
GCAGCGCAACCTGAAGAGTGTATTCGACGAGGCGATTCGCGCCGTGCTCA
ATCCCCGGCCTGCGGCCAAACCGAAGAACAAGAAATGCGTGATTCTGTAG
ATGGCCACTGGTCCAGCTACTCAATCCCTCAAGTGTGTGGTGACGGGTGA
TGGTGCGGTAGGAAAAACATGTCTCCTGATTTCGTACACGACCAACGCTT
TCCCCGGCGAATATATCCCTACCGTATTTGATAACTACACCGCTAGTGTC
ATGGTAGATGGCCGACCGATTAGCTTGGGACTCTGGGATACTGCTGGACA
GGAAGATTACGACCGTCTTCGCCCATTGTCCTACCCGCAAACCGACGTCT
TCCTGATCTGCTTCTCCATCGTTAGCCCGCCGTCCTTTGACAACGTTAAA
GCCAAGTGGTTCCCGGAGATTGAACACCATGCCCCCAACGTCCCCATTAT
CTTGGTCGGCACCAAGCTCGACCTTCGAGACGACCGTGGTACCATAGATG
CTCTCCGACAGCGGAAGATGGAGCCCGTCTCCTACGAACAAGCTCTGGCC
GTGGCCAAGGAAATCCGGGCACACAAGTACCTCGAATGTTCGGCCCTGAC
GCAGCGCAACCTGAAGAGTGTATTCGACGAGGCGATTCGCGCCGTGCTCA
ATCCCCGGCCTGCGGCCAAACCGAAGAACAAGAAATGCGTGATTCTGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAC1KJC3_002041Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002041-T1KJC3_002041-T1-proteinAspergillus niger KJC3polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002041-T1.exon1KJC3_002041-T1.exon1Aspergillus niger KJC3exon
KJC3_002041-T1.exon2KJC3_002041-T1.exon2Aspergillus niger KJC3exon
KJC3_002041-T1.exon3KJC3_002041-T1.exon3Aspergillus niger KJC3exon
KJC3_002041-T1.exon4KJC3_002041-T1.exon4Aspergillus niger KJC3exon
KJC3_002041-T1.exon5KJC3_002041-T1.exon5Aspergillus niger KJC3exon
KJC3_002041-T1.exon6KJC3_002041-T1.exon6Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002041-T1.cdsKJC3_002041-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR003578
DBxrefInterPro:IPR005225
DBxrefInterPro:IPR001806
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF00025
ProductRho GTPase protein rac1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1518256..1519217 +
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