You are here

Home

KJC3_002517-T1, KJC3_002517-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002517-T1
Unique NameKJC3_002517-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:2783776..2785077+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002517-T1 ID=KJC3_002517-T1|Name=KJC3_002517-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1302bp|location=Sequence derived from alignment at ch2:2783776..2785077+ (Aspergillus niger KJC3)
CCGCCATCTCTCTCCATCCTGCTATAGCTTCCTGCTCTTCCCCCGTCATC
TGTTTTCGGCATTTCATCTTCCCTCCTCAAGCTTCAGCTCCTCCTCATTC
CAACTGAGTTTCAATTCTCCCAGCTCACACTGGTTTCCTGCCCCCTCACA
ATACATCACCTTTCCACGCCGTCACCATGACAGGCTTCGATTTCTCCAAC
TACAACCGTAACGCGGCTCTCCACGCGAAGGGAGTCCCTCTTCCCAAAGC
CACCAGCACCGGTACCACCATCGTGGGATGTATATACGACAATGGCGTTG
TGGTAGGTACCTCCGGAGCAACCCAACAAGCTCCCTAGTACCCAAGACGA
CGATCACGAACTCACCACATCTGGCATAACCACAGATTGCAGCAGATACC
AGAGCCACCAGCGGCCCGATAGTAGCAGACAAGGTAAGCACCGCTTTTCC
CAGGACATTCACACCTATCTCCAATAACCCAACTCAACAACTAACACACT
ACCCCCCACACCTCCAGAACTGCGAGAAACTACACTACATCGCGCCCAAG
ATCTGGTGCGCCGGAGCCGGAACGGCCGCCGACACCGAGTTCACGACGGC
GTTGATCAGCTCGAACATCGAACTGCACGCACTTTCGACGGGCCGGCCCC
CACGCGTAATCACCTGCATGACGATGCTGAAGCAGCACCTATTCCGATAC
CAAGGCCACATCGGCGCCTACCTGGTTGTGGCGGGTGTCGATCCCACCGG
CATTGGTCTTTTCACCGTCCACGCCCACGGATCCACCGACAAGCTTCCCT
ACGTGACCATGGGATCAGGTTCTCTGGCCGCGATGTCGGTGTTCGAGTCG
ACATGGAAGCCGAATCTGGACCGTGAGGGCGCGATCGCCCTGTGCGCGGA
GGCCATCAAGGCCGGTATCTTCAACGATCTGGGATCCGGTAGCAATGTCG
ATGTTTGCGTCATTGAGAAGGACAAGCCTACGCAGTTGCTGCGGAACTAC
ATCAGGCCTAATGAGCGTGGCGAGAAGGAGCGCAATTACCGCTTCCCCAA
GGGTACTACGGCTTATTTGAACCAGAAGATCATCAGCAAGGAGGATATGC
GGAAGTATATCTCTGTTGAGGAGGCGTCTGGTGATCCTAATTTGATGGAG
GTGGATGTCTAAATGATGTGTTGTTATTGTTGTTGTAACGACTAGAGCAA
AGAAAGGTTCTTATTTACTACTGGTTGTGTCGGGCTGGCTTTATCTTAAA
TATGGGCCACGCATGAATAATTGCCATTATGATTGTTGAAATTTAGGACG
AT
back to top

Coding sequence (CDS) from alignment at ch2:2783776..2785077+

>KJC3_002517-T1 ID=KJC3_002517-T1|Name=KJC3_002517-T1|organism=Aspergillus niger KJC3|type=CDS|length=2457bp|location=Sequence derived from alignment at ch2:2783776..2785077+ (Aspergillus niger KJC3)
ATGACAGGCTTCGATTTCTCCAACTACAACCGTAACGCGGCTCTCCACGC
GAAGGGAGTCCCTCTTCCCAAAGCCACCAGCACCGGTACCACCATCGTGG
GATGTATATACGACAATGGCGTTGTGATTGCAGCAGATACCAGAGCCACC
AGCGGCCCGATAGTAGCAGACAAGAACTGCGAGAAACTACACTACATCGC
GCCCAAGATCTGGTGCGCCGGAGCCGGAACGGCCGCCGACACCGAGTTCA
CGACGGCGTTGATCAGCTCGAACATCGAACTGCACGCACTTTCGACGGGC
CGGCCCCCACGCGTAATCACCTGCATGACGATGCTGAAGCAGCACCTATT
CCGATACCAAGGCCACATCGGCGCCTACCTGGTTGTGGCGGGTGTCGATC
CCACCGGCATTGGTCTTTTCACCGTCCACGCCCACGGATCCACCGACAAG
CTTCCCTACGTGACCATGGGATCAGGTTCTCTGGCCGCGATGTCGGTGTT
CGAGTCGACATGGAAGCCGAATCTGGACCGTGAGGGCGCGATCGCCCTGT
GCGCGGAGGCCATCAAGGCCGGTATCTTCAACGATCTGGGATCCGGTAGC
AATGTCGATGTTTGCGTCATTGAGAAGGACAAGCCTACGCAGTTGCTGCG
GAACTACATCAGGCCTAATGAGCGTGGCGAGAAGGAGCGCAATTACCGCT
TCCCCAAGGGTACTACGGCTTATTTGAACCAGAAGATCATCAGCAAGGAG
GATATGCGGAAGTATATCTCTGTTGAGGAGGCGTCTGGTGATCCTAATTT
GATGGAGGTGGATGTCTAAATGACAGGCTTCGATTTCTCCAACTACAACC
GTAACGCGGCTCTCCACGCGAAGGGAGTCCCTCTTCCCAAAGCCACCAGC
ACCGGTACCACCATCGTGGGATGTATATACGACAATGGCGTTGTGATTGC
AGCAGATACCAGAGCCACCAGCGGCCCGATAGTAGCAGACAAGAACTGCG
AGAAACTACACTACATCGCGCCCAAGATCTGGTGCGCCGGAGCCGGAACG
GCCGCCGACACCGAGTTCACGACGGCGTTGATCAGCTCGAACATCGAACT
GCACGCACTTTCGACGGGCCGGCCCCCACGCGTAATCACCTGCATGACGA
TGCTGAAGCAGCACCTATTCCGATACCAAGGCCACATCGGCGCCTACCTG
GTTGTGGCGGGTGTCGATCCCACCGGCATTGGTCTTTTCACCGTCCACGC
CCACGGATCCACCGACAAGCTTCCCTACGTGACCATGGGATCAGGTTCTC
TGGCCGCGATGTCGGTGTTCGAGTCGACATGGAAGCCGAATCTGGACCGT
GAGGGCGCGATCGCCCTGTGCGCGGAGGCCATCAAGGCCGGTATCTTCAA
CGATCTGGGATCCGGTAGCAATGTCGATGTTTGCGTCATTGAGAAGGACA
AGCCTACGCAGTTGCTGCGGAACTACATCAGGCCTAATGAGCGTGGCGAG
AAGGAGCGCAATTACCGCTTCCCCAAGGGTACTACGGCTTATTTGAACCA
GAAGATCATCAGCAAGGAGGATATGCGGAAGTATATCTCTGTTGAGGAGG
CGTCTGGTGATCCTAATTTGATGGAGGTGGATGTCTAAATGACAGGCTTC
GATTTCTCCAACTACAACCGTAACGCGGCTCTCCACGCGAAGGGAGTCCC
TCTTCCCAAAGCCACCAGCACCGGTACCACCATCGTGGGATGTATATACG
ACAATGGCGTTGTGATTGCAGCAGATACCAGAGCCACCAGCGGCCCGATA
GTAGCAGACAAGAACTGCGAGAAACTACACTACATCGCGCCCAAGATCTG
GTGCGCCGGAGCCGGAACGGCCGCCGACACCGAGTTCACGACGGCGTTGA
TCAGCTCGAACATCGAACTGCACGCACTTTCGACGGGCCGGCCCCCACGC
GTAATCACCTGCATGACGATGCTGAAGCAGCACCTATTCCGATACCAAGG
CCACATCGGCGCCTACCTGGTTGTGGCGGGTGTCGATCCCACCGGCATTG
GTCTTTTCACCGTCCACGCCCACGGATCCACCGACAAGCTTCCCTACGTG
ACCATGGGATCAGGTTCTCTGGCCGCGATGTCGGTGTTCGAGTCGACATG
GAAGCCGAATCTGGACCGTGAGGGCGCGATCGCCCTGTGCGCGGAGGCCA
TCAAGGCCGGTATCTTCAACGATCTGGGATCCGGTAGCAATGTCGATGTT
TGCGTCATTGAGAAGGACAAGCCTACGCAGTTGCTGCGGAACTACATCAG
GCCTAATGAGCGTGGCGAGAAGGAGCGCAATTACCGCTTCCCCAAGGGTA
CTACGGCTTATTTGAACCAGAAGATCATCAGCAAGGAGGATATGCGGAAG
TATATCTCTGTTGAGGAGGCGTCTGGTGATCCTAATTTGATGGAGGTGGA
TGTCTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PUP1KJC3_002517Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002517-T1KJC3_002517-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002517-T1.utr5p1KJC3_002517-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002517-T1.exon1KJC3_002517-T1.exon1Aspergillus niger KJC3exon
KJC3_002517-T1.exon2KJC3_002517-T1.exon2Aspergillus niger KJC3exon
KJC3_002517-T1.exon3KJC3_002517-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002517-T1.cdsKJC3_002517-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002517-T1.utr3p1KJC3_002517-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092641M3
NoteMEROPS:MER0000542
DBxrefInterPro:IPR023333
DBxrefInterPro:IPR029055
DBxrefInterPro:IPR001353
DBxrefInterPro:IPR024689
DBxrefInterPro:IPR000243
DBxrefPFAM:PF12465
DBxrefPFAM:PF00227
Productproteasome core particle subunit beta 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:2783776..2785077 +
Powered by Drupal