You are here

Home

KJC3_002931-T1, KJC3_002931-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002931-T1
Unique NameKJC3_002931-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:3974004..3975306+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002931-T1 ID=KJC3_002931-T1|Name=KJC3_002931-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1303bp|location=Sequence derived from alignment at ch2:3974004..3975306+ (Aspergillus niger KJC3)
CCATGAGACCTCGTTCCACATCCGAAAATGGACTATCCGGGCTAGTCACC
CTGGACGAGGGGCCTGTTTCCGTGGGGGCCAAATCAACCACCAGTTAGTG
CTTACTTCTGTCTTGTTTGTTGCTCCTGCGACCGCACAGCCCCCATGCTA
TCTAAGATCAAAACCCCTCAGATAGCCTGCCTGGTTGATTCTCTTCCGTT
TCATCTCTCACAGTCAAGCAAACTTCCTTCCCCTCGTTGAATCATCATGG
CCACCGACAGCGAAGCCCCCAGACCGGCGGTTGTTATTTGCACTGGCTCT
TACCACACACCTGCCCCCTATGAGCCCTTGAGACAGGCTCTCGAATCCAG
CGGGTTCGAGGCTTACTGTCCTCAGCGTCCAACCTGTGATCTCAGTAAGC
TCAATGTGGGAGATATCAACCATCCGGATTTTGATTTAGGGCCTCCTGCG
GAGGGCTATCCCAGTGACATGGATGATGTTCAAGTCATCAACCAGCTGCT
GGGCAGGCTCATCAATGAAGAGGGCAAGGAAGTCCTCTTATTAGCCCACT
CGTCCGGCGGTATGATAGCCTCTCAAGCTGCTGTCCCTGAGCTGCAGTAC
AAGCCTCGTCAGGAAAAGGGAGAGCGAGGCGGTGTAACTGCGATTTTTTT
TGTCGGGGCTTTTGTGATACCAGTGGGTGAATCTATTCACTCATTCTTCC
AACCCAAGGAGGGGCCCATTGTCACGCCGCCATTTATGCGGTTCCATGTA
AGTTGTTCCTTTAAACCATTGGGTGCAAGTACCCTTCAGTAGAGCAGCCT
TGATTGACGATATCGGTACACAGAAACACGGAGCCGCTGGCCTAGGAACA
ATTGTTGATGCCCCGCGCTTCATGTTCAATGATCTGGACGCTGAGGAAGC
CGCTAAATGGGCCGCAACCTTGACTGCATCACCAGTCAACACTGGCGTCC
TGACCAACGACGTTTATTCAGTCTTGCCTTGCGCATACCTGATTCTGGAT
AATGATCAGACTCTGCTACCTCAGTACCAGGAGGCGATGATCGCACTACA
GGTGCAGAAGGGGAATGCGTTCACCGTCTATCATGCTCCATCCGGCCATT
CCCCCCACCTGAGTTGGACGGACCAATTAGTCAGCAAGGTGATCGAATTC
AGAAACAAGTGTCATGCTTAGTGGTTGTGTGTGACCGGGGTGTGATCATA
TAAGTCATTCTGTCTGCAATAGGGAGTGATAGTTATATACAATTGCGTCT
GGAGACAAATTTATAAACTTCTTTTTGATATATATGTTCGTAATAAAGAG
GAC
back to top

Coding sequence (CDS) from alignment at ch2:3974004..3975306+

>KJC3_002931-T1 ID=KJC3_002931-T1|Name=KJC3_002931-T1|organism=Aspergillus niger KJC3|type=CDS|length=1698bp|location=Sequence derived from alignment at ch2:3974004..3975306+ (Aspergillus niger KJC3)
ATGGCCACCGACAGCGAAGCCCCCAGACCGGCGGTTGTTATTTGCACTGG
CTCTTACCACACACCTGCCCCCTATGAGCCCTTGAGACAGGCTCTCGAAT
CCAGCGGGTTCGAGGCTTACTGTCCTCAGCGTCCAACCTGTGATCTCAGT
AAGCTCAATGTGGGAGATATCAACCATCCGGATTTTGATTTAGGGCCTCC
TGCGGAGGGCTATCCCAGTGACATGGATGATGTTCAAGTCATCAACCAGC
TGCTGGGCAGGCTCATCAATGAAGAGGGCAAGGAAGTCCTCTTATTAGCC
CACTCGTCCGGCGGTATGATAGCCTCTCAAGCTGCTGTCCCTGAGCTGCA
GTACAAGCCTCGTCAGGAAAAGGGAGAGCGAGGCGGTGTAACTGCGATTT
TTTTTGTCGGGGCTTTTGTGATACCAGTGGGTGAATCTATTCACTCATTC
TTCCAACCCAAGGAGGGGCCCATTGTCACGCCGCCATTTATGCGGTTCCA
TAAACACGGAGCCGCTGGCCTAGGAACAATTGTTGATGCCCCGCGCTTCA
TGTTCAATGATCTGGACGCTGAGGAAGCCGCTAAATGGGCCGCAACCTTG
ACTGCATCACCAGTCAACACTGGCGTCCTGACCAACGACGTTTATTCAGT
CTTGCCTTGCGCATACCTGATTCTGGATAATGATCAGACTCTGCTACCTC
AGTACCAGGAGGCGATGATCGCACTACAGGTGCAGAAGGGGAATGCGTTC
ACCGTCTATCATGCTCCATCCGGCCATTCCCCCCACCTGAGTTGGACGGA
CCAATTAGTCAGCAAGGTGATCGAATTCAGAAACAAGTGTCATGCTTAGA
TGGCCACCGACAGCGAAGCCCCCAGACCGGCGGTTGTTATTTGCACTGGC
TCTTACCACACACCTGCCCCCTATGAGCCCTTGAGACAGGCTCTCGAATC
CAGCGGGTTCGAGGCTTACTGTCCTCAGCGTCCAACCTGTGATCTCAGTA
AGCTCAATGTGGGAGATATCAACCATCCGGATTTTGATTTAGGGCCTCCT
GCGGAGGGCTATCCCAGTGACATGGATGATGTTCAAGTCATCAACCAGCT
GCTGGGCAGGCTCATCAATGAAGAGGGCAAGGAAGTCCTCTTATTAGCCC
ACTCGTCCGGCGGTATGATAGCCTCTCAAGCTGCTGTCCCTGAGCTGCAG
TACAAGCCTCGTCAGGAAAAGGGAGAGCGAGGCGGTGTAACTGCGATTTT
TTTTGTCGGGGCTTTTGTGATACCAGTGGGTGAATCTATTCACTCATTCT
TCCAACCCAAGGAGGGGCCCATTGTCACGCCGCCATTTATGCGGTTCCAT
AAACACGGAGCCGCTGGCCTAGGAACAATTGTTGATGCCCCGCGCTTCAT
GTTCAATGATCTGGACGCTGAGGAAGCCGCTAAATGGGCCGCAACCTTGA
CTGCATCACCAGTCAACACTGGCGTCCTGACCAACGACGTTTATTCAGTC
TTGCCTTGCGCATACCTGATTCTGGATAATGATCAGACTCTGCTACCTCA
GTACCAGGAGGCGATGATCGCACTACAGGTGCAGAAGGGGAATGCGTTCA
CCGTCTATCATGCTCCATCCGGCCATTCCCCCCACCTGAGTTGGACGGAC
CAATTAGTCAGCAAGGTGATCGAATTCAGAAACAAGTGTCATGCTTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002931KJC3_002931Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002931-T1.utr5p1KJC3_002931-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002931-T1.exon1KJC3_002931-T1.exon1Aspergillus niger KJC3exon
KJC3_002931-T1.exon2KJC3_002931-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002931-T1.cdsKJC3_002931-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002931-T1.utr3p1KJC3_002931-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002931-T1KJC3_002931-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR029058
DBxrefInterPro:IPR000073
DBxrefPFAM:PF12697
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:3974004..3975306 +
Powered by Drupal