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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1619337..1620001- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003318-T1 ID=KJC3_003318-T1|Name=KJC3_003318-T1|organism=Aspergillus niger KJC3|type=mRNA|length=665bp|location=Sequence derived from alignment at ch3:1619337..1620001- (Aspergillus niger KJC3)
ATGTCCGAGCAGCCCTATGATCCCTACATCCCCTCTGGCGCCAATGGGGC
TGGCGCCGGCGCCAGCGCTGCGCAAAATGGCGACCCCAGGACACGGGAAA
TCGACAAAGTAAGTTGCCGAAACGCCTCGCGGTCAACTTTTATCGTTCCA
CAAGGATATGTCGCCCAGGTTGAATAGGATGTGATGGCTTTCCAGTTTTC
ATTTGGACTTCCATCTGAGTTCAACTGGACTTGGAGGCCACCGGGTCTTT
TTGAATCTTATTAAGCTTGTGTCTATTATGGCATTTGTCGCAAAGTATTT
ACTAACGCTGTGTTTCTTCTCTGTCTAGAAAATCCAAGAAACCGTTGACA
CAATGCGCTCCAACATCTTTAAAGTTTCAGAACGTGGTGAACGTCTAGAT
TCCCTCCAGGACAAGACGGACAATTTGGCAACATCAGCGCAGGGATTCCG
CAGAGGTGCCAACCGCGTGAGGAAGCAAATGTGGTGGAAGGATATGAAGA
TGCGCGTGTGCCTAATCGTTTGTATCATTATTCTGCTCATTGTGATTATC
GTCCCTGCAGGTAAGATCAGCGCTATCCTCCAGCACTCCACCAAGCTGGA
CTCGGAAAAACATCCCGGAATGCGCTAACAGCTCTCTCCTTTCAGTTGTC
GCCACCAAACATTAA back to topCoding sequence (CDS) from alignment at ch3:1619337..1620001- >KJC3_003318-T1 ID=KJC3_003318-T1|Name=KJC3_003318-T1|organism=Aspergillus niger KJC3|type=CDS|length=1080bp|location=Sequence derived from alignment at ch3:1619337..1620001- (Aspergillus niger KJC3)
TTGTCGCCACCAAACATTAAAAAATCCAAGAAACCGTTGACACAATGCGC
TCCAACATCTTTAAAGTTTCAGAACGTGGTGAACGTCTAGATTCCCTCCA
GGACAAGACGGACAATTTGGCAACATCAGCGCAGGGATTCCGCAGAGGTG
CCAACCGCGTGAGGAAGCAAATGTGGTGGAAGGATATGAAGATGCGCGTG
TGCCTAATCGTTTGTATCATTATTCTGCTCATTGTGATTATCGTCCCTGC
AGATGTCCGAGCAGCCCTATGATCCCTACATCCCCTCTGGCGCCAATGGG
GCTGGCGCCGGCGCCAGCGCTGCGCAAAATGGCGACCCCAGGACACGGGA
AATCGACAAATTGTCGCCACCAAACATTAAAAAATCCAAGAAACCGTTGA
CACAATGCGCTCCAACATCTTTAAAGTTTCAGAACGTGGTGAACGTCTAG
ATTCCCTCCAGGACAAGACGGACAATTTGGCAACATCAGCGCAGGGATTC
CGCAGAGGTGCCAACCGCGTGAGGAAGCAAATGTGGTGGAAGGATATGAA
GATGCGCGTGTGCCTAATCGTTTGTATCATTATTCTGCTCATTGTGATTA
TCGTCCCTGCAGATGTCCGAGCAGCCCTATGATCCCTACATCCCCTCTGG
CGCCAATGGGGCTGGCGCCGGCGCCAGCGCTGCGCAAAATGGCGACCCCA
GGACACGGGAAATCGACAAATTGTCGCCACCAAACATTAAAAAATCCAAG
AAACCGTTGACACAATGCGCTCCAACATCTTTAAAGTTTCAGAACGTGGT
GAACGTCTAGATTCCCTCCAGGACAAGACGGACAATTTGGCAACATCAGC
GCAGGGATTCCGCAGAGGTGCCAACCGCGTGAGGAAGCAAATGTGGTGGA
AGGATATGAAGATGCGCGTGTGCCTAATCGTTTGTATCATTATTCTGCTC
ATTGTGATTATCGTCCCTGCAGATGTCCGAGCAGCCCTATGATCCCTACA
TCCCCTCTGGCGCCAATGGGGCTGGCGCCGGCGCCAGCGCTGCGCAAAAT
GGCGACCCCAGGACACGGGAAATCGACAAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016192 | vesicle-mediated transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR042855 |
| DBxref | InterPro:IPR016444 |
| DBxref | InterPro:IPR001388 |
| DBxref | PFAM:PF00957 |
| Product | synaptobrevin |
| Product | SNAP receptor |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1619337..1620001 - |
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