You are here

Home

KJC3_004139-T2, KJC3_004139-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004139-T2
Unique NameKJC3_004139-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4040060..4042005-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004139-T2 ID=KJC3_004139-T2|Name=KJC3_004139-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1946bp|location=Sequence derived from alignment at ch3:4040060..4042005- (Aspergillus niger KJC3)
GTTGGATCGAGTTGTTTGTGCTCTGAAACACACTAGACCACAATAAAGCA
AAACAGGCTGTTCACTTCGACTGTGTGATAAGTCAGAGATGCTGCCGACG
TGTACCCGTTGCAGAAGCCGGAGGATCAAGGTACCTACCTTCCCTTATCG
CAATTATCATCAAATAGTAGACTAAGGCACGTTCCTGCAGTGCGACTCCT
TGCTTCCAGCGTGCGCCAACTGCTCTAAGCATGATGTTGAATGTACCTTT
CGAGATGAAGCTTTGCAAGCAGATGTTACCCGAGGGTCAGCAGGACGGCG
TCCCACACTCAATCATCCATAGGCTCATCAATTCACAGCTATCTCAAGAC
ATTGCAGGATAGAATCGAGAAGCTGAACTCTGAGCTAGCGTTGAACTCTC
AAATCTCTTCAAGGTGAAAGGACGTCGTTGCCAGTATTATCTGCCCGAAG
CTAATCTGACTATGGAGGGCGGAAGTGGCCTTACAGAGAGGTCTCCTGAT
GGCATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATCCTTATGCCTAA
ATCTGGTAGAGATATGTACCTAGATCTTTCACTCTCATCACGTCTTGTCG
AGGTCACACTCGAGGTACTTTCACAACATCACAAAACAAATGACTGGAGG
ACTATTGATAAAGAAAGTGACCCGTTACCAGATATCCCGCACCTTGACAG
GTCCATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAAAGACTACCATC
GCTTCGTTCGACCAAAATATGATATCGTGGAGCTTGATATTCTGAGCCAT
GACGGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGGTTTCAAATACT
GATGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAAATCTCCAAATT
GGAAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATGACTTCATCGCC
CCAATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTTATCCTACTACT
TCTCGTATATGAACTGGCCGATCCAACTCGCGGCATCATCTGGGAACTCC
TCGATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGAACCGAACCGCG
TCGAACTCCAACGACTTCACTAGTAATGAGGAATCGGTTTCAGCTGATCC
TGTGAGAACCCATCTCATGTGCGTACTTAGGGAGATTGAAGGGTGGGCAC
AGCACTGAATTCATTAGTCCTTCTTGGCTCATCTTTTGTAGGTCACTACG
AACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATATGTCATATTGCG
CACCGGAAAAGGATATATCTTCTATCTTATACAACAAACTATTCCACGCA
ACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTGCCCTTTTGTTGG
TGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTGCAGATGCTAGCC
CAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACTTGTGTCAGGCAT
AAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCAGCAGGGAAAGGG
GATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGGCAGAACTCTTAT
CAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTTGTATCACCGATT
ATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACTAGCGACAGCTAT
AGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAGACTTGATTCTAT
GCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAGGGTGGCCAATCT
TACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCATAGCCATATGGA
ACATAGAAGTTGAATCAGGATAGTCAATTTGGCAAGCACGGTGTCATGCA
AGTCATTGAGGCTTAAAACTATAGGAGAGAAAAATCTCATCTATGC
back to top

Coding sequence (CDS) from alignment at ch3:4040060..4042005-

>KJC3_004139-T2 ID=KJC3_004139-T2|Name=KJC3_004139-T2|organism=Aspergillus niger KJC3|type=CDS|length=2706bp|location=Sequence derived from alignment at ch3:4040060..4042005- (Aspergillus niger KJC3)
GTCACTACGAACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATATGT
CATATTGCGCACCGGAAAAGGATATATCTTCTATCTTATACAACAAACTA
TTCCACGCAACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTGCCC
TTTTGTTGGTGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTGCAG
ATGCTAGCCCAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACTTGT
GTCAGGCATAAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCAGCA
GGGAAAGGGGATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGGCAG
AACTCTTATCAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTTGTA
TCACCGATTATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACTAGC
GACAGCTATAGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAGACT
TGATTCTATGCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAGGGT
GGCCAATCTTACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCATAG
CCATATGGAACATAGAAGTTGAATGGAGGGCGGAAGTGGCCTTACAGAGA
GGTCTCCTGATGGCATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATC
CTTATGCCTAAATCTGGTAGAGATATGTACCTAGATCTTTCACTCTCATC
ACGTCTTGTCGAGGTCACACTCGAGGTACTTTCACAACATCACAAAACAA
ATGACTGGAGGACTATTGATAAAGAAAGTGACCCGTTACCAGATATCCCG
CACCTTGACAGGTCCATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAA
AGACTACCATCGCTTCGTTCGACCAAAATATGATATCGTGGAGCTTGATA
TTCTGAGCCATGACGGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGG
TTTCAAATACTGATGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAA
ATCTCCAAATTGGAAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATG
ACTTCATCGCCCCAATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTT
ATCCTACTACTTCTCGTATATGAACTGGCCGATCCAACTCGCGGCATCAT
CTGGGAACTCCTCGATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGA
ACCGAACCGCGTCGAACTCCAACGACTTCACTAGTAATGAGGAATCGGTT
TCAGCTGATCCTGTGAGAACCCATCTCATGTGCGTACTTAGGGAGATTGA
AGGGTCACTACGAACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATA
TGTCATATTGCGCACCGGAAAAGGATATATCTTCTATCTTATACAACAAA
CTATTCCACGCAACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTG
CCCTTTTGTTGGTGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTG
CAGATGCTAGCCCAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACT
TGTGTCAGGCATAAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCA
GCAGGGAAAGGGGATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGG
CAGAACTCTTATCAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTT
GTATCACCGATTATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACT
AGCGACAGCTATAGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAG
ACTTGATTCTATGCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAG
GGTGGCCAATCTTACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCA
TAGCCATATGGAACATAGAAGTTGAATGGAGGGCGGAAGTGGCCTTACAG
AGAGGTCTCCTGATGGCATGTCAACACGGCCTTCCTTGGTCTCTTCCTTC
ATCCTTATGCCTAAATCTGGTAGAGATATGTACCTAGATCTTTCACTCTC
ATCACGTCTTGTCGAGGTCACACTCGAGGTACTTTCACAACATCACAAAA
CAAATGACTGGAGGACTATTGATAAAGAAAGTGACCCGTTACCAGATATC
CCGCACCTTGACAGGTCCATGCTTACACCTGGCGTGGTGCGCGGGCTTCT
GAAAGACTACCATCGCTTCGTTCGACCAAAATATGATATCGTGGAGCTTG
ATATTCTGAGCCATGACGGCATCCACCTACGGAAGCTCCCGGAAATGCGA
AGGTTTCAAATACTGATGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTA
CAAATCTCCAAATTGGAAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTA
ATGACTTCATCGCCCCAATCATTTGTGCTGCGGACGCAGATTCTATGAAA
GTTATCCTACTACTTCTCGTATATGAACTGGCCGATCCAACTCGCGGCAT
CATCTGGGAACTCCTCGATGTTGCGCGAAGAACATGCTTGCAGCTAGGCT
GGAACCGAACCGCGTCGAACTCCAACGACTTCACTAGTAATGAGGAATCG
GTTTCAGCTGATCCTGTGAGAACCCATCTCATGTGCGTACTTAGGGAGAT
TGAAGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004139KJC3_004139Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004139-T2KJC3_004139-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004139-T2.cdsKJC3_004139-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004139-T2.utr3p1KJC3_004139-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004139-T2.exon4KJC3_004139-T2.exon4Aspergillus niger KJC3exon
KJC3_004139-T2.exon3KJC3_004139-T2.exon3Aspergillus niger KJC3exon
KJC3_004139-T2.exon2KJC3_004139-T2.exon2Aspergillus niger KJC3exon
KJC3_004139-T2.exon1KJC3_004139-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004139-T2.utr5p3KJC3_004139-T2.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_004139-T2.utr5p2KJC3_004139-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_004139-T2.utr5p1KJC3_004139-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4040060..4042005 -
Powered by Drupal